MmuINT0100832 @ mm9
Intron Retention
Gene
ENSMUSG00000025208 | Mrpl43
Description
mitochondrial ribosomal protein L43 [Source:MGI Symbol;Acc:MGI:2137229]
Coordinates
chr19:45080553-45080932:-
Coord C1 exon
chr19:45080754-45080932
Coord A exon
chr19:45080660-45080753
Coord C2 exon
chr19:45080553-45080659
Length
94 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ACCTTCGCCGGGTCTCGCAGGGA
3' ss Score
6.8
Exon sequences
Seq C1 exon
GGTTAGTCCCGCCCCCCGGCTCCGCGTCCTGGCTCTCTAACCGTAGCCATGACCGGTCGCGGGACTTCGAGCCGCTTTCTGACCAGCGTCCTCCATAATGGGCTAGGGCGTTACGTGCAGCAGCTGCAGCGCCTCAGCCTCAGCCTCAGCCGGGATGCGCCCTCGTCCCGCGGCGCCAG
Seq A exon
GTGAGGCACGCGGAAGCGGGAGCGCCGGAAAGGGAGGCGGGGAGCTATGGGGCTGGGTTCGGGCCACCGTACTCACCTTCGCCGGGTCTCGCAG
Seq C2 exon
GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025208-Mrpl43:NM_053164:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.165 A=NA C2=0.149
Domain overlap (PFAM):
C1:
PF0504711=L51_S25_CI-B8=PU(1.9=2.3)
A:
NA
C2:
PF0504711=L51_S25_CI-B8=FE(69.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGTCCTCCATAATGGGCTA
R:
GCGCGGGTTCACGTATACTAC
Band lengths:
168-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: