RnoINT0094388 @ rn6
Intron Retention
Gene
ENSRNOG00000014890 | Mrpl43
Description
mitochondrial ribosomal protein L43 [Source:RGD Symbol;Acc:1307593]
Coordinates
chr1:264756019-264756546:-
Coord C1 exon
chr1:264756219-264756546
Coord A exon
chr1:264756126-264756218
Coord C2 exon
chr1:264756019-264756125
Length
93 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CACCTTCGTTGGGTCCCCAGGGA
3' ss Score
7.98
Exon sequences
Seq C1 exon
TTCAGAAGCTCCACGCTCCCGCCCCCAGCTTCGCGTCACCACTCTCCTCTCTAGTGTTCTGTCCAAAACGTGGGTTGCCCGCACGCGCCGCTCGCTGTGACTCCGGAAGCAAAACTCTCCAGGGCGCCCATGCCCCCGGAAGCGGAAGTCACCGGTTAGTCCCGCCTTCCAGCTCTCCTGGCTGTCTGGCGGTAGCCATGACCGCGCGCGGTACTCCAAGCCGCTTTCTGACCAGCGTCCTCCATAATGGGCTAGGTCGCTACGTGCAGCAGCTGCAGCGTCTCAGCCTCACCCTCAGTCGGGATGCGCCCTCGTCCCGCGGCGCCAG
Seq A exon
GTGAGGCATGCGGAAGCCGGAGGACCGGAAAGGGGTTCGGGGAACGACGGGACTGGGTTCGGGTCACCGTACTCACCTTCGTTGGGTCCCCAG
Seq C2 exon
GGAGTTCGTGGAACGCGAAGTGACGGACTTCGCCCGACGGAACCCAGGAGTCGTAATATACTTGAACCCTCGCCCGTGCGCTGTGCCGAGAATAGTGGCCGAATACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014890:ENSRNOT00000020020:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.159 A=NA C2=0.108
Domain overlap (PFAM):
C1:
PF0504711=L51_S25_CI-B8=PU(1.9=2.3)
A:
NA
C2:
PF0504711=L51_S25_CI-B8=FE(69.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGTCCTCCATAATGGGCTA
R:
ACGGGCGAGGGTTCAAGTATA
Band lengths:
172-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]