BtaINT0095160 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003294 | MRPL43
Description
39S ribosomal protein L43, mitochondrial [Source:RefSeq peptide;Acc:NP_776988]
Coordinates
chr26:21692397-21692758:-
Coord C1 exon
chr26:21692593-21692758
Coord A exon
chr26:21692504-21692592
Coord C2 exon
chr26:21692397-21692503
Length
89 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
ACCCTTCTCGGGTCCCTCAGGGA
3' ss Score
8.62
Exon sequences
Seq C1 exon
GCGAGACCCGGCTTGGCGACTGGAGAGCTGTGGCCATGACTGCCCGCGGGACCGCGAGCCGCTTCCTGACGAGTGTCCTGCACAACGGGCTGGGTCGCTACGTGCAGCAGCTGCAGCGGCTCAGCTTTAGCCTCAGCCGTGACGCGCCCTCGTCCCGCGGCGCCAG
Seq A exon
GTGAGCCGAGGAAGGGCGCGGGGATGCGACTCCAGCCGCTGTCGCCCCGGGTCAGGGGTCACCTTGCTCACCCTTCTCGGGTCCCTCAG
Seq C2 exon
GGAGTTCGTGGAACGGGAGGTGACCGACTTCGCCCGCCGGAATCCCGGGGTCGTCATATATGTGAACCCGCGGCCGTGCTGTGTGCCGAGAGTAGTGGCCGAATACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003294:ENSBTAT00000004265:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.027
Domain overlap (PFAM):
C1:
PF0504711=L51_S25_CI-B8=PU(1.9=2.3)
A:
NA
C2:
PF0504711=L51_S25_CI-B8=FE(67.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCTGACGAGTGTCCTGCA
R:
GCCGCGGGTTCACATATATGA
Band lengths:
179-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]