MmuINT1023385 @ mm10
Intron Retention
Gene
ENSMUSG00000025208 | Mrpl43
Description
mitochondrial ribosomal protein L43 [Source:MGI Symbol;Acc:MGI:2137229]
Coordinates
chr19:45006063-45006442:-
Coord C1 exon
chr19:45006264-45006442
Coord A exon
chr19:45006170-45006263
Coord C2 exon
chr19:45006063-45006169
Length
94 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
ACCTTCGCCGGGTCTCGCAGGGA
3' ss Score
6.8
Exon sequences
Seq C1 exon
GGTTAGTCCCGCCCCCCGGCTCCGCGTCCTGGCTCTCTAACCGTAGCCATGACCGGTCGCGGGACTTCGAGCCGCTTTCTGACCAGCGTCCTCCATAATGGGCTAGGGCGTTACGTGCAGCAGCTGCAGCGCCTCAGCCTCAGCCTCAGCCGGGATGCGCCCTCGTCCCGCGGCGCCAG
Seq A exon
GTGAGGCACGCGGAAGCGGGAGCGCCGGAAAGGGAGGCGGGGAGCTATGGGGCTGGGTTCGGGCCACCGTACTCACCTTCGCCGGGTCTCGCAG
Seq C2 exon
GGAGTTCGTGGAACGCGAGGTGACCGACTTCGCCCGACGGAACCCAGGAGTCGTAGTATACGTGAACCCGCGCCCGTGCGCCATGCCACGAATAGTGGCCGAATACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025208:ENSMUST00000097715:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.159 A=NA C2=0.108
Domain overlap (PFAM):
C1:
PF0504711=L51_S25_CI-B8=PU(1.9=2.3)
A:
NA
C2:
PF0504711=L51_S25_CI-B8=FE(69.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCGTCCTCCATAATGGGCTA
R:
GCGCGGGTTCACGTATACTAC
Band lengths:
168-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types