MmuINT0101413 @ mm9
Intron Retention
Gene
ENSMUSG00000021144 | Mta1
Description
metastasis associated 1 [Source:MGI Symbol;Acc:MGI:2150037]
Coordinates
chr12:114336489-114350424:+
Coord C1 exon
chr12:114336489-114336656
Coord A exon
chr12:114336657-114350356
Coord C2 exon
chr12:114350357-114350424
Length
13700 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
GCAGATTTCTCTGTTTGCAGACT
3' ss Score
6.31
Exon sequences
Seq C1 exon
GCGGCGGCGGCGGCGGCGGAGCAGCGCGGTCCCTTTAAACCGCCCGCCGGCGCCCCCGCGCCCGCCCCCGCCCCGGCCCGCGCCCGGCCCGCCGCCCGCGCTCGCGCCCCGCGCCCCGCGGCCCCGCCGCCGGCCCGGACATGGCCGCCAACATGTACAGGGTCGGAG
Seq A exon
GTAAGGCCCCGCCACGGCCTTTATGCGCCGCGGGCCCACCGCCCGCGCCTCCCGGCCCCGCCGCGGCCTCCGCGCCTCCCCCACGCCGCCCTCGCGCGCGGCCCGCGCCCCTCCCCCCCGTCCCGCCCCCGTCGCGCTCGCGCCCCGCCCGCGAGGCTCGGTTCTGGTCTCCGGTGCTCGTCCCGGCCCAAAATGGCCCCTGGGCTGCCGGTGCCGGGGCGCGCGCGCGCGGGGCGCCGAGCGGCGCTGGGAGGGGGCTATGCCCACCTGTTGGGGACCGGGGGTGGCCCGCGGGACGCAGGCGGAGTAGCGGCGAGTGGCCAGGGTGGCCAGGGCATCCCGGGGGCCGGCGGGCCCGGCGGCGGGAGGCCTGGGCCTGGGTCCGGGCCGGAGCCCCTGAGCAGGAGCACGTGCCTCTGGAGCTCTGGCTGCGGTCCCGCGAGCAGGAGTTTCGGGGTCTGGGGGGCAAGCGGTCTCCTCAGGGGGCCGTGCAGGGCCCGCTAGGTGTGCAGGCACCGTGAGTCCTGTTGCAGGGGCCACGAGCCCGTCCCAGCCGAGGGCTTTCCTTAGCAGGGATTCCTGGGGGGGAGGGTTGGCTACAGCAGGGGGCCTACATCCCAAGTGCAGGTCTGAATCACCCCAAACTTTTCTCTGCCTTACTGCTCACCCCTGCCTAGCAAGGAGGCACTTTCCTGGCCTTTGGAAGGCCAGAGGTCCCTACTGACCTGGGGCCATGAGAGCCTGTCTGCCCGGGCTGGTCCCCCAGTTGTTGGGCCCTGGGAAGAAGCCCTTTGCCCAGTTTGTGTATGTGTGTGTGTGACCAGGATACTCCGGAATGGCCTTGCACACATCCAGGCCATGCTGACCCTTATAGTTATCCCATAGCCTTCTTCTGCTCTCTCTCTGGACTTGGAGACCCTCCTGGTCACAGCCTAAATGTGGATGAGTCTGCTGCTGTCCCCCACTAGCAAACTTGGGCTTTGCTGTGAGAGTGTGCTTGAGTGCAAGACCACCCCGAAACACCCATCAACCACTCCTACGGAAGACCCCGACCCCTGAGTGCCTAGGTCATTTCCTTCCATCTCACACCAGCGGGACCCAGCCAGCTCAGTTCTGTGGCTTGGGGCACAGGGGTGCAGCTATCTCCACACGGATGGCTCATCCTCCCACAGCAGGCCTCCCACAGCAGGGGCCTCTCAGGGAATCCCTGATCTCACACCTTTGCTCTCTGCCAGGACCTGCCACAGGTCATACAGCCTGGGGTCATATGAGGAGGGGCTGGTCTGTGAGGATTCAGCCTTGCCAGCCCCAGAGGGAGTGGGCCAGGTCACTGGATGCTATAGGCTTACTGGCCTGCTTTCCAGGGCAGAGGCTAGCTCCTGGCTCCCCAGGGGGCCCCCTTCCAGGTGTTGCCCCTTATTCTGCCCAGTGAACCATTTTTGCAAGGATCCCCCTTCCTGTTCACCATGGTTCCTGCTGATATGGCTGCTGCTTCCTCGGGTTCTACCTCTAGTTCCCTCATTTCAGAGGTTCTCCTTTGCCCGTGAAAGGCTCCCATTATCCTGGTCCCTGACCCTGCTCTCTATCTGGACTTGGAGCCCCTCCTCCTGGTCACAGACTAAATGTGGATGAATCTCTTCCCCCACTAGCAAAACTGGGCTCTGCTGAGAGTGTGCTGGAGTGGAAGACCACCCTGAAACACCCATCACCACTCCTGTATGACCCTGACCCCTGGGCCACCTCCACCCCCCACCCCTCCTGGTTCTCATGGTTTCTGGCCCATGATGGCATGTCATATGCTGAAGAAATGAATAAATAGCATGAATAAATAGCAAAAGAGTGAAGGTCTGGGCTCCTGCATCTGACTCAGGCAGTGGGAGGTGGTGAGAGCGTGGAAGGTGGTCTGCAGGGCACTGAGGTCTCAGCCCGTTTCCAAGAGTCCCACAGCTGCCTGCCTGGCGGAGGGGCTATAGCCAAGGCCCTAGCAATCTGGTGAGGTCCTAGACTGGCTCATCTGTACCTGTTTCCCCACGGCGTGGCTAGAGATCCATCCCTGTTTTCATCCTGTGTCCTATATCTGCTCCTCCAGGACATAGCTGGTATCCTGGAGTGTCTGAGGCCCCATGAGGATAGGTGGCTGGACCCTGAGCCTGTGTGTCAAGCAAGTATGTATGACTAAGGAGTAGGGATAGGTCTGTGTTCCTATGTATATGTTGGCTGCCAAGCGTGGTCTGGGGTACCATCTGTATTGCCTGTAGTGCTTTGCAGGGTAGTGGTCCCCAGAGGGTATCCATGGCAGGTGAAGGGTCAGCCCCTAAAGGACTTTTTGGATAGGGAACTCTAGTGCCATCCTGGGAGCCCCAGCACGGCCTTGCAATGGTGCTCTGGGTGGTGGCTGTTGGCTTCCTGCCCCAGTCACTGCTTGCCAGATTCTCAGGCCCCCAGATGAGAGAGGACACACTGTGGCTCCCTGAGCAGGCCTTGGTTCAGTCTGTTGTCTGGGCTCTGGCCCCCTGGGAAATGTGTTCTGAATAGTGGCTGGTGGAGACCTAGGTTGGGGTATCTCTGCCCCCACCCCACCCCCTTCTTGGCACACGTGTCAGGTTTAAGTTTCAGGAAAACTGCCTTGCCCCAGTGTCCCAACTGTGAAGGCATGTGGACAGGAAAGATTGGGATTTGCAGCACAATGTTTGGGCGTCCTGTACTCCCTGGCAAGCTTGTCTGGAAGACGTGTTAGGGTGGGTTAGGCCGGTGAAAGTATGGGGGAGGAGGTTGCAGGAGCCCCAGAACACTTGGGCCAAGAGGTCAGCCAGGGTGGAAAGATAGACTGCATCTTAAGAGGTGGGCTTGCCAGGCTCCTGCCAGCGCCTGAGAGCAGGGGTGGGTGTTGGGTGAGGGTTTGAGAGGCTGTCCCTACTGAGAGCTTGGATTAAGGCTGAGGACATCCTAGGGCAGGCACCTGTGTTTCTTACCTGTGTGTCTGTTGTAAAATTAGGTGGCATTTTTGAACAGAGGAACAGAGATTGCTTTGAGTCTCCCCACGTCACAGCTGCTTCTACGTGGGAGCTTTTTTTTTTTTTTTTTTCTTTTGGTTTTTTTGGAACTCACTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCACCTCCACCTGGCTACGTGGGAGCTTTTTGTCTTTAATTGAAGGGCTATGGCCATTCCCTTTGCAGTATTTTTTTCCTCTCACCGCGAGAAGTTTAACCCGTATTCTTTTGAGTGGCTTTGTGCTTGTGGAACGTTACAGGAAGCAACAGCCTGCAGGCCACAGACACATCACAGCTGCCCCTGCCCTGACTTGTGTGGTGTTTCCTATGCCCAGAGCCAGCCTCTTGGTTTCCTACCTTGGGTTTTCATTTATATCATCATTTGTATTTAATCCTGGTAATAGACACTTTTGTTTTCTGCTTCAGTAGGGTTTTTTTTAATTTTTTTCTAGAATTATATATCTTATGTATGAGTACAGTGTAGCTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGAGCCACCACGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGGGCAGTCAGTGCTCTTAACCGCTGAGCCGTCTCTCCTGTCCTTATTTTGGTGTTTTGAGACAGGATTTCTCTGTGTAGCTCTGACTGTCCCGGCACTCACTCTGTAGACCAGGCTGGCCCAGAACTCAGGGATATACTTGCCTAGAGTCAGGAAGCAGGGGCCAAGTCATTAGGAGCCATGCTAAACAGGAAGGGTGGTTGGAGTGCTGGTATTAAAGGCATGTGCCACCATGGCCTGGCCAATTGAAACTTTTGGACTAAAATATTCCCATGATTGAAAATTCTAGAGTTGTGAGGGAATACCTATACTGTGAGCAATGTGCCAATTTGAGGAGCCCGGTGGAGGCTTCTGGGCTCTGCCCAGTTCTTTGCCACAGCACTTGTAAGGAAAAGCCCACAAGTTTTGACCTTAAGCCTGCATCTTTAGCAGTTGTAGAAGTAGGCCAGGCCCAAGGCTGCAGCCTGTCTGTGGAGCAGCATGGGACCTCTCAGCCTCTGAAGCCATTGAGCCATCATCTGTGCTGAAGGCTGCCGGGCAGAGGCCTCCCCATCCTGTTTAGCCTACTAAGCGTGGCTAGCCTGCCCCCTTGTGGGGCCAGAGGTGGGTTGTGTGTCTGCTATTGGCTTTCTGAATTATTTTGAGAAGGAACATTTTAGCATTAAACTCCCGTATTAGCAACAACTAAAACAGAAGTAAATGGTCCAGAGAAGCAGCTCTCGTGGTTAAATCCCAGAACACGAAGCTTCCCTCTGTACTGGCGCCGACCTGCAGGGACCTCCACGACTGACTGTCCCTGAGCAGGGTCCTGGTGCCCCATGAAGCAGGATTTCACTCGGACGTGGCATAAGGGATGCCAGGGTGAGTTCCTGGGACAGGCATAGGCCCCTCTGTCCCTGGTTGGCACTACTGAACACCTGGGTACTCCTGGCCAGACATCAAGCTTGGTCCTGCCTGACTGGGGCCGGCCAGTTGCTCCTCATCCTTGTCCTGTCCCAGCATGCACTCTGCTTCAAACCTGTGTTCTCAGGACATTTAAGGTCACACGCAGAAAGCATCTTTCCTTGCTTCTGGGCCTTTATAGAGTTCCCCAGGGTGCCCACAGAGAGTGATGCAGTGGGGCTCCCTTAACGGCACTAGGCAAAGTCTTTGTGGACCTCATATCAGCGGGCGTGTGGAGGAGGGCTGCTGGGATTGCTTTTATGGGAGGGGACCTGGGAAAGGCTCTGGCTCTGGACATTAGCATATAAGATAATGTCAGATGTGGTCCTGAGCAGATCTGATCTACTTACAGCCACTTAGGGAACCTGTTACCCAGTGTCCTGCCCTCAGCCCCTGCTGTGCCCACAGGGCCCTGGTGGCCTAAAGTCTTTGTGTGTGCTCCACCCCCGGCTATTCCACTTCACCCCCCCCCCCCCAGGGGCCTTCAGGACTTGGGAGTCAGGGTCTGCTCCTGAGATCTAGGGAGACTCTAAGGTTCATATTTAGGGTCCACAACTGCAGGGTGCTGCTGCAGTTCAGGAGGTTCACAGGCAAGTCTGCTGTGTGCAGGGGTAGCGTGTGATATCCTGAAGAACCAGGGTCAGAGGCAAGGTGTGGGTTACTCGTATGGTAGGGGAGTTCTCAGTGTACCCCACACCCACTTAGGAAATGAACCACAAGGCCATTTTTCATTGGTCAGCAGAATCCAAAACAATCTGTTGGTTCATCCCCGGGGCTCCGTGTGGCCTTCCTGGGCCGTTTGGCTTCTTGTGCACACTGGGTGCCACTGCTGGGGGTTATTGGTCATTTGTTCTTGCAGGTAGGGTCTTGGCCTCTTCCCCATTTTAGATTTTGCGGGGCCAGTGAGATGGTCGTTCCCTGTACTGGCTGCCCTCCAAGGTCATGACTATGTTACCAGAGGCCTTCTGAAGTAGAGTGGAGGCCAGGCTGAGCTAGAAGACTCAGGTGCTGGCTGGGTGACAGGACGATGGCCAGGATGAAGTCTAGTGCCCCTAGAGGTGGAGGCTTCAGCTTACAGGAGTGCCTAGGTCGTCAGGCAAGAGGAGTGCATGGGAGACCCGAGGCCTTAGCATGCATGTGGCTCCCGCAGGATCCACCTCTGAGCAGTCTGTCCGTAAACTGGGAATGGACCCTGCAGGGTTGATGCTGTTGCAGATGTTGCTACCCTCTGTGTCAGAAGGGAGGGGGAGGGGTCTAAGGACCCATAGGGACCTTGGCTTTTGACTGGGAGTACAGAGTCCATGTTTGGTCAGTATCTATGGTAACAGTAGGGGGTGTGGGCTCTGGCGCCCACCCACCAGCCAGGCCAGCTGCCCCTGAACTCCTGAGTTTATTTGATCCTCTTGCCTCAGCCTTCTAAGTGCTAGGACTGCAGGTGTGCACCGTACCCAGTTAGGTCTGTGCTTTTTGGCAAATGTCACTACAGATATTTAGGACATTCCCATAATCTACACATTTCTGAGTCTTCTTTGCTGGGAAGTCTCCCTTCTCTTAACTACTCCTGAACTCTGTACCCCAGAGTGTCTGTCTCATAGATGGGACCATCCTTTAAGATGGCTGCTTTACCACTCTGGATTGGCTTTCTCTTCTGAGGAGTGCTCCTCTCTGGGCGTGTCACTGTGAATCCCCAGTCCATGAACTTCATGTGGACTTCAAGGTGAAAAACAACAGACATGGGTTCTTACTTCTCCTGAGTAAAAATGTATGATTGTACAGTGAGCTCAGGAGTTCAAGGGCACCTGGTCTGGCTAACAGCCCTTGTTTCCCGCACCCCCCCCCCACCCCCGCCCAGAGGCACCAGAACCCACACTCGTGTGCCTTGCAGTGGTGTGGCGGGTGTGCAGGGTGCCCTTACTGTTTTAATTGGAGCTCCCTGGTGAATGGTGTCCGCTTCTCATGAGTTCTTATTGCCATCTGTATGCTGTCCTTTCCCTGCTGTGTGTTCTGTTTGTTTGGTTCTTTGAGACTGGGTCTTGCTATTTAGTGCACTGTACTGGTAATCTTCATGCCTCTGCTGTGTGGGATTAAGTGGCTACCATGGTCTGCTGTTTGATTTTTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTAGACAGAGACTCTAAGTGTCCCTGATTGTCCTGGAACTCCCTGTTTGACCAGGCTGGCTTTGGATTCAGAGATTGACTCACCTGCCTCTGCCTCTTAGCACTGGGATTAAAGGCGTAAACATCCATTGCCTGGCCTTTCCCTGGTGTTTAAATTGGATTGTGTTCTTACTGTCATGGACTGTGAGGTGATTATTTATATATCTTATTATTTTGTGATGTGGAAGACTAACCAAGGGTCTGCTTATACTGGATAAGGGCTGTTCCACCATACCCCAGCCCCTTGAGTTGGTTTATATTCTGCATTTCAGACCTCAGAGGACAGAGGTTGTGTGCTTTGTGCGTGTCTCTTAGAACCCAAGATCACAAAGTCTTTATCCTTTTTTATTACATAATCCTTAAAAGTTTGCGTTTGACTTTGGTGTCCATCTTGTTAGTTTCTTTGTGAGGGTTAAGGGCCTTTGTACTTTAATGCTTGTGTCCAGTTCTCCCCACTGGGTCACCTTGACAGCAGTGAGGATGTGGGATGCTGGTATTGGGTTGGTCGACCCGACCGTACAGTTGTTCGGTGATCATCTGGCAGCTTTTGTCAGTGCAAGTCTTGGCCTGGAGCTTACTGTAGTGTTGGGAGGGATTTTGCTGGTGCGAGCCCTCCCTCCAGCTTTGCTCTTTACAGAACAGTGCCTTCTGTCCTGGTTCCTGGCTTCCCTGTCAAAGCCTTGTTGGGCTTTGTTTGTTTGATTTCTCGCTGTGTAGCCCTGGCTGTCCTGAATTCTCTTGTAGACCAGGCCTCAACCTCACAGAGACCTGCCTGCCTCTGCCTAGGAGTACTGGAATAGAGCAGCGTGTCACCAAGCCTGCTCTTGGTTGGTTGGTTGGTTGGTTGGCTGGCTTTCTGGTTTGGTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTTGTCATCCTGAAACTCACTGTGTAGATCAGGTTAACCTCAGACTCAGAGATCTGCCTGCCTCTGCCTCTGCCTCCCGTGCTAGGATTAAAGATGTGTTCGACGACTTCCCTGACTGTTGCTGATTTTTTTTTACTGTGTAGTATTTTACATTTATTTATGTAAAACACAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGTGGGATGTGCATGCGTGCCAAAGCACACATGTGGACAACTTAGGGGAGCCTGTTCTTTCCCTTCGACCATCTGGTTTCTGGGAAAATGAGGTCAGGTTGTAGGGTTTGACTGTGAGTGTTCTTAGTTGCTGGCCCTGGCTTGTTGATTTCTACAAAGCAAACAAGTTAGTGAGATTTGGATGACCCTGGCTGATGGCAGGGCCTCTTGGAGACTGGCAAACTGCATTGGCAAACGGTACTGCCTAGGTTTGTGTGACTCACGATCTAAGAATGGCGTTTACATTTTTATGTGGTTGAGGGGGAAAAAAATCACAAGAATACTTTGTGACATGAGATTATATGAAATTCAAATTGCTTTACCCATAAATAAAGTTTTATTGGAACATGGCCACAGAAGCTCCAGTGTGGCTGGTTCCGAGCCACACCGAGGAGCCTGTCTTCCCAGGCACAGAACAGACCACTGAGGCTTTGCCATCAAACATGGGGTGGGGCTGTCACAAAGCAGCCATCCAGGTCTCCATGGACCACTGGTTGGGCATGCTGTGATTAAATAGAGCTCTAATGCCCTCTGCCTGGAGACCACGCAGACCTGTAGCTGGGGGGCTCAGTTCCACCAGATCCCCACACTTCACAGGCTAGTTGTGCATCCATGGCTGTAGCCTGTGCTCCTGACTGAGAGCTTTGGATCAAGGCTCCCATGACACTCTTCAGGTTCAGTTAATTTGTTGGAGCAGCTTGCAGGGGTAAACACTTGTCCTGTTTGCTGCCCCATTACAAAGGACACAAGCACACAGATGAAGAGCTGGAAGTCCCAACCCCTGATCCTGCCTGGTCTTTCAGTAGTTAGCTCTGTGCTTGGCAATGCCCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTAACCATCTCACGGGTGTCCTGTGATGTGCTGGGTACCAGAGAGCCTCAGGTATATGGGTCTATGGGTCTCCTGTGTTAGTCAACTTTTTACTGCTTTCACAATTTGAGACTACCAGTTTACAAGGAAGAGAGTTTATCTTGGCTGACAGTTTCTGAGGTTTCAGTCTGTCAGTTGTGTTGCTGTTGGACCTGTGACACAGCAAAGCATTTGAGTAGAAATGTAAGATGTCACAGAACTGGGCATTTTACAGCGACTTGGAGCATTAAAAGCACAAAACAGGAAAGGCACACAGGCCCTGCCCCCAACACTGCCAAGCTGGGGACCAAGCCTTTCTGAGCATGGGTCTGTGGAGGCACCCCATATCTTATAATTGCACATGCAAAGAACACTCTTATCTCTGTGAAGGTCCCAAGGCTTTTTAGAAGCCATGTGCCAGGAAGTGAGGATGGAGACCACGTATGCATTTCCTTTGTCAACAGTATCACAGTAGCTGTTGCTTTTGTGTGTGCCTGACACAGCAGGTCCTAGGAACACAGTGGCCTTACTATTTTGAGCCCAGGTGTGTGCTGTGAATATACTTGTACTTAGGGACTTTGTGGTTTTAAGGCAGTGGCAAATAATGCCACTAGTCATTGATTACCTCAAATGGTATAGTCTTGCCTGATATCCAGGACTATCACTGTGGGAGGAGTACGGTGTATGTTGGCTTTACAGTATCGTCAACTTGAAGCAGAATGGTCAGAACAATAAAAAAATGTAGAGGGAGAATCTCATACCAAAGGAGCCTCCTCAGTAAGTGAGGATATGTTAGATATGTCAGATATGTCAGATATGTTAGATATGTCAGATATGTTAGATATGTCAGATATGTTAGATATGTCAGATATGTCAGATATGTTAGATATGTCAGATATATCAGATATGTCAGATATATCAGAAGGGAGGTTGAAGCAGTGCACTTGGCCGCTGCTGCTCAGCCATTGATTGGAGGCACCAGAAGAGGATGTGAGCCTCTGAGTTAGTCTGTAAGCTGGAAGTAGTTGGGAGAAAACTGGAGGTGCAAACAGGAGAGGAGTCTGCTAAGATGTGTGACGGTGCATGGGGCTGAAGGGAGCGGGGACTAGACAAGTGAAAAAATAAAATAAAAATCAAGACCCAGAAAGGCAGCCACACCTCACTGAGTTGGTGCCACAGACAGCGTGCTTCTGACTACAGGGCCTTGCTTGGCCATGATTCTGTGAACATTGTTAGAAGCAAGAAGGTGGACATGGCGATCGGTCCTTGAATACAGCTCAGCATGGTGACCTCCCAGTGCTTTTGGACCAGAATGGAAGATTCCCAAAACAAGACAAACCATTTAGAGTCACCATTAGTAAAGCAATGAATGGCTTAGATTTGGTTCTTGCTACATGCTTGGTAATGCTGTTAGTTCATTGTGATGTAATCTCGCTCAAGGCCACACAACATTTGTTTGCAATGCTTAGACTGTGTTAAGTTCACTCTTACTGGGGAGAAATAGAACTGGAGGTCTGAGCAGAAATAGTTCCTCCCTGGCAGAAGCTCGTGTCTGAGCCAGGAGTTGGCCCCAGCAGCCCCAGAGAGGTTGGCCTGTACAGTAGCCCTTGCTCTGAAGGGTGGGAGGCATTCCTTAGACTGCCCTCAGGACCCGTCCTTTGCTAGCAATGCTCAGGAGACTACAGTGCTGTTAAACCCAGTTACCTGCTTCTTGACTAGAAGGGTGCGCCGCACTAGCCGTGGCTAGCACGTGGTACTGATGACTGGGGACACACGTGGAGGTGGGCCTTGGAACCAGGACTGTTACTGGAGTGTGGTCACATGTCTGTGAGTGACCACTTTCTCAGTCTCCGTCCCTTCGGGAGTCAAGTCGACACCATGCAGCCTCAGCCGTGGATCCATGTTAGTACCAAGGATGGTTGTCATGGCCAGAGCCACTCCCAGGACTGTGTGCACAGCCTGGCGTGCAGGGAGAGCGCTCGCTTTGGACATCTTCAGGGAACAGGTCCATGGAAAAGCACACAGCAGGCTCCGCAGCAACTGCGTCTGCTCTGCTCAGATCGGTGTCTGCACACACAGTCCATGCTTGCTATCCCATTGAGGGTTCGAGCAGAGCAGTACCCCTGAGCTGTTGTCACCCCTAAACCTCTTATCGAGAGTTCGAGCAGAGCAGTACCCCTGAGCTGTTGTCACCCTCTAAACCACTTGTTTTTTCATTGATCCATCTGGCCAGTTTTTAAATTTTTTATTTCAATAAAACATTTGGAAGTTTTGCTGTGCCTGTGTGTTTCGCTCGGTTCAGGCTTTACCTGCCTGCCTAAATTGTACCTTGTGGGTCAGCAGAGATGTGTCAGTCTCTACTGTAGTTTATGCGTGGCTTTTACAGTCCTGTTTTAATTGTGTGTCAGTGTGTGGGTATGTATGTGCATGAGCGCAGGTACCGTGGCGGCCAGAGGAAGCCATCTGATCCTTGGGCTGGAATTAGGGGCATTTATTCATCCCTGTGGGTTTGGGAGCAGTACGTATTAACCTATTAACTGCCGAGCCGTCCCTACTGTTTATACTTTTATAATACACACCCTATCACTGTGTGTGTGTGTGTGTGGTGTGAGAAAACGAGGCTCTCACAGTCCACCACCAATGAACTGCCATTGTTGGAAGGCCTGCATCACTGTCTTCCACGGGTGTAGGAGGCTCTCTGCTCCTGAGCGAGCTGTACGGGTTTGTGTTCTAGGCAGTTGGTTTGTTCAGCAAAGTTGTTGAGTAGCTGGCACAGATGGAGCAATGGCCTCCGTGATGTTCTCCCTCCTCACAGCGCTCCTGTCGTGGCGGGTGGTTTTCTATAGCTTTTCTCTTTTATTAATGTTTTAGTCTCATTTTAGTTTCTTTGTTTTCTATGTTCTGTGTTCTTGGTTTTCTTCACGCTAGAGTGTAACGTGCACTTAGCACACTTCCTGCTGGGCAGGTACCTCTGAGGTTTGGAAGAGGCATGGAGTTGGGTCACTGCTGCCACTGAGCGTGTCCTCTGGTAGTACGACCCCCTTCCCTCGCCACTGCCTGTTCCCTGCTCTCGGATGTCTGTGTGCTCGCCCTGAGAGGAGCTAGCTCAGTGCCTGCTGCTCAGGGTCATCCTGGGTGCCCTGCTTGTTTGCCTGCTCTTTTTTTGGGAGGCCTTTGATTTTATTCCAGTTTTTGGCAAGTATGAATAATTTAGGGTTAATTTGCTATGATTTGTAAACATGAAATTTTAGACTGTTGATGCCTTTTTTTTTTTTTTTTTCTTTTTGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCAGAAATCCGCCTGCCTTTGCCTCCCAAGTGCTGAGATTAAAGGCGTGCGCCACCATGCCTTTTTAAAAAAACTAGTTTTATTAAGAAATTACCCAGATTGCCGGTGGTGGCGCACGCCTTTAATCCCAGCACTAGGGAGGCAGAGGCAGGCGGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACAAACAAACAAACAAACAAACAAACAAACAAGAACTTGTCCAGATTGATGAAATGTATCAGGTTGTTCCAAGAGGGCCTACATCTAAGCCCAGAGATTTCCCCCAATCCTGTACCCTTTGCTTCTGGGGCCTTGCTTTTTCTTAGAGACCCTTCAGCCTTTCGAGCACTAGCTGTTGGAGTAGTAAGGGTGTGGTTGACCTGTTGGTAGTTGGCACAGGCTCAGGAAGCAATATGGTAACAGGCCTGTGCCTGCGAGAGTACCTGAGCCAGGAGCTGCAGTTTCTGACTGTCCAGGAGGAACCTTCTAGTCAGCTCAGTTAAGGAGGGGTTCATTGCCAAGGAGTTCCAGCCTGACAGGATGATAATCTGTCATGCTCTCTGCACTGGGACTCCCGGAGCCTTGGGTAGTAGGGTGATCTGAACTGTCCAGACAGTCTGCCAGCTTTCAAAAGTGTTCATGTCTATCTGTAGAGCTAGAGAGAGGTTTTGAAGCCATATAGCTTCACCAAAATGCTAAAGTTTATACTGACCTGATAGTTCCAGGGGACCTTGTAGGGTCATGTGGCAGCCCTTGGATTTTGCTCCTCTAGGCTCTGAGGCCCTCTAGCTCTCTGTCTCTAGAGGAGACATCTTGTAATTCTGAGGTGACTGTCTTGTTGGTTGCCTAGAAGCCATGGCTTGTGTTCTGTGTAGTTGCTGTTTCTGTCTGGCAGAGGCCAGGCATGTCCTCCTGGGCTGCAGTGGTCTGTGGTGGTGTAGGACAGACACACGGTTCATGCAACAGCCACTTAGAAAGGGGCCTAGTAGCTTTGAGCAGAGCCTTGGGGTAGCTTTTCAGTTGGAGTTTATGAGGGAAGCTGCAGTTGGTCCCCACAGACTTCCCAGTAAGGCTTGTGCTCCTACAGGCAGTTGATATTGGATGTTTGCGGGCTGCAGGCTCCTCTTAGGCAGCTCCTCTCTCTTGTCTCTCCCTCACACCCCTCTCTGGGCTCTGTCCATCTACTGCTCTGTGGACAGGGTCTGCCAAGGCTCTGCTTGAGGCTCCCAATCAATTCTTTTGGTGTCTTTTTTTTTTTTTTTTAAAGATTTCTTTATTTAATGTATGAGTGATCTATCTGCATGTACACTTGCATGCCAGAAAAGGGCACCAGATCACATAGTTGTGAGCCACCACGTGGTTGCTGGGTATTGAACTGAGCCATCTCTCCAGCCCCTTTGGGGCGGTGGGGGTGGGCTGTCTTAAATGGTGGCAATGACTTAGAGACCTGGTGCTATGTGTTTATGCAGATTTCTCTGTTTGCAG
Seq C2 exon
ACTATGTCTACTTTGAGAACTCCTCCAGCAACCCGTACCTGATCCGCAGGATTGAAGAGCTTAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021144-Mta1:NM_054081:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (disopred):
C1=0.300 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0142613=BAH=PU(3.7=60.0)
A:
NA
C2:
PF0142613=BAH=FE(13.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: