Special

MmuINT0102408 @ mm9

Intron Retention

Gene
ENSMUSG00000037974 | Muc5ac
Description
mucin 5, subtypes A and C, tracheobronchial/gastric [Source:MGI Symbol;Acc:MGI:104697]
Coordinates
chr7:148985169-148985748:+
Coord C1 exon
chr7:148985169-148985221
Coord A exon
chr7:148985222-148985647
Coord C2 exon
chr7:148985648-148985748
Length
426 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGGTTCCCTTCCTTCTCCAGTGT
3' ss Score
9.61
Exon sequences
Seq C1 exon
CACCTGCACCCAAGGAGCACTAACTTGTATTGGAGGTCCTGCCCCGACTCCAG
Seq A exon
GTGAGCCTGTGAGGGAGTCTGTCAACTATGGGAGTATACCCAAAGAGCTGTCATGGTTGATGCCCACCCCAAGTGAACAGAGCTGGGCTGATGATCAGTTTTACTGTGTGGTGTAGTTTGTGTCTGTGCCCTTGGACTCCAAAACGGGAAAGATGAGGTGTGGACACTGTGCACACATAATCATGAAAACATTCAGTACATTCTCACATAACACACACACACACACACACACACACACACACACACACACTCACATGCATTCTGCATGCATAACACAGATGTGCACCCTCCCCCACACACAGGCCAGGCAGCCACATGCTTGGCTGTCTAGAAACAAATGGCTAAGATACTACAGCACTGGCCTCCCTTAGAGAAAGTTTGGTAGGGTTGGTTGGCATCACCTCACTGGTTCCCTTCCTTCTCCAG
Seq C2 exon
TGTGTGATGCACCCATGATCTATTTTGACTGTCACAATGCCACACCTGGTGACACTGGAGCTGGATGTCAGAAGAGCTGTCACACCCTAGACATGACCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037974-Muc5ac:NM_010844:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption upon sequence inclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
PF0182612=TIL=PU(51.6=94.1)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000039699





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000122353, ENSMUSP00000131681
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr11:1175271-1176150 
HsaINT1023943
(MUC5AC)
Human
(hg19)
chr11:1255079-1255434 
HsaINT0106811
(MUC5B)
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr29:51398740-51398846 
BtaINT0096543
(MUC5B)
Cow
(bosTau6)
chr4:113447406-113447525 
BtaINT0141418
(SSPO)
Chicken
(galGal4)
chr2:414308-414914 
GgaINT1026447
(SSPO)
Chicken
(galGal3)
chr5:15873856-15874509 
GgaINT0054952
([1])
Zebrafish
(danRer10)
chr7:72071794-72072199 
DreINT0099130
(muc5.3)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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