MmuINT0102575 @ mm9
Intron Retention
Gene
ENSMUSG00000059908 | Mug1
Description
murinoglobulin 1 [Source:MGI Symbol;Acc:MGI:99837]
Coordinates
chr6:121813739-121815901:+
Coord C1 exon
chr6:121813739-121813887
Coord A exon
chr6:121813888-121815751
Coord C2 exon
chr6:121815752-121815901
Length
1864 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGG
5' ss Score
4.44
3' ss Seq
CTTGATTTTGCTTCTCACAGGTG
3' ss Score
8.64
Exon sequences
Seq C1 exon
CTCCAGTAAAAGGAAAATTTGCCTTGGAGATCCCTGTGGAGTTTAGCATGGTCCCCATGGCTAAAATGCTCATCTACACGATCTTGCCTGATGGAGAAGTGATTGCAGATTCTGTAAACTTTGAAATTGAAAAGTGTCTTCGCAACAAA
Seq A exon
GTGAGGGATTTATTACCTATAATTTCTATTTTTAAAAGGGGGGTTCTGAAGGACAGAGATTTCAGATAAATATGCTAAATCCATTCATTGGTGTGTGCCTCCATGGCAAAGATGTGGACAGTACCAGAGTGCCAGATTTAAATTTATAAACCCCATATATGGTTAGAGGGTTAAGAGAGAGGAAGCAAGGTTCTGTACAGGAAGAGAGGAGAACTGAATCCTTAATAAGTACATTAAAGTTGTGTAAGTTAAATTTTTTGTATTTATCTGCGTGTGCACATGTGCATGTGAATGCACACATGTAGAGGAAAGAGAACAAGTTTACAAGTCTGTGCTCTCCTTCCTCATGAGTCTGAGAGGTCAAGCTCAGGTCAACAGGCTTGTCTGGGGGCACGCCTTTACCCACTGATCCATCTCATAGATCCTTAATGTCATATAATCTTATGCGATACCAGTCATAGGATCCAGGCCTATCAATTGTTAGGATATTTATTTTCCCTCTAGTTTTTCATTATGATTTTTTCTTAGATGTGATAAGAACATAAGACCCTTGCTAGTATTAATTTTTATGACACAGCATATTGAGTGTGTGCTGTATCACACATCTTCAGTTCCTAGTCACATTAGGCAGCTGAAACTACATCTACTGGTGAGCATCTGCACTTTTCTTACTCTAGAGTAGCTAAGGACACCTCTGATCTGCTTTCATCAGCCCCTTTCAATACATCCCAGTCTTCAGCAGTTTATTCTGTCCCTGAATTGAAATAGGAAGGATTGAGAGATGAAGGTGAATGGCAGATAATCTGATAGCCAGACAGAGAGGCAGATGTAGACATATTTCCAATTAGAATACTGATCTGATTTTTCTACCCTAGTTATAAGATTCATCATGAAAAATTCCTTTAATTAAGTAACTATGTTGGGTGGTCCTTTAATCCAAGCACAGGGGTGGCAGGCAGATCTGAGTTCAAGGCCAGCCAGGTTTATAGAGTGAGTTCCAGGACAGCCAGGACTACAAACACACACACACACACACACACACACACACACACACACACACACACACACACAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCAAGAGAGAGACAGAGACAGACAGACAGAAAGACAGACAGACAGACAGACAGAACGAGACAGAAAGAGTGAGACAAAGACAGAGAGACACAAAGATGGAGATAGAGGGACAGAGATGGAAAGAGAGAGGGAGGGGGAAATGGGGAGAGGAGTAGGAAAAGAAGGAGAGATGATGGAGAGGGAGTGTACCTTCTGTGTTGCAGAGATGGCTCAGTAGTAATAGCACTTGCTGCACTGAATTCTGATTCCAGCATTCTTATAAATGCCAGGCATATCCAGAGGGTTTTACAATCCCAGTGTTGTGGAGGCTAGAGGCAGGAGAATGGCTAGGACTTCCTTCTGCCAACTTAGCTCCAAGATTATGAGGGACATTCTTAAGAGAATAAGGTAGAAAGTGGGAGCAGGGCACTCATACCCTCCTATGGCCTCTGATGGGTGCACGGGTGTATGTACCTGCACACTCGTGTGCATTACACCACAGTCACATATATGTGCACATACACCAAAAGTGAGTTAGTTGAAGAATTTCAGGGAGCCTAATCGTCACTTTGTTGCTTTAGAGTTTGAAGACATTTCCTGTCTTCCTAAATCAGTTCCTGGGGAGAAAGGGGAAGCAAGGACTTCAGTTGTGCTTCTGACAATATTTATAATCTGGAAAAACAGATGTGTGTGCAGAGATCCAGGGCGACTTCGCCTGGCAGGTTTCAGGGCTGCAAAAGCAGGAAACTTCACTGCTAAGCTTGATTTTGCTTCTCACAG
Seq C2 exon
GTGGACCTGCGCTTCAGCACTTCTCAAAGTCTTCCCGCCTCACAAACCCGTCTGCAGGTCACAGCTTCTCCTCAGTCCCTCTGTGGCCTGAGAGCTGTGGACCAGAGTGTGCTACTCCTGAAACCCGAGTCTGAGCTCTCCCCTTCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059908-Mug1:NM_008645:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF077039=A2M_N_2=FE(32.5=100)
A:
NA
C2:
PF077039=A2M_N_2=PD(25.8=78.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTAAAAGGAAAATTTGCCTTGGA
R:
GGAAGGGGAGAGCTCAGACTC
Band lengths:
294-2158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: