MmuINT0103195 @ mm10
Intron Retention
Gene
ENSMUSG00000056328 | Myh1
Description
myosin, heavy polypeptide 1, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339711]
Coordinates
chr11:67217464-67217949:+
Coord C1 exon
chr11:67217464-67217582
Coord A exon
chr11:67217583-67217752
Coord C2 exon
chr11:67217753-67217949
Length
170 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAC
5' ss Score
5.54
3' ss Seq
CTAAACTCTTATTTTTTTAGGCC
3' ss Score
8.67
Exon sequences
Seq C1 exon
GTGAATACTCACGCCAGCTAGACGAAAAGGATTCATTAGTTTCCCAGCTCTCCAGGGGCAAACAGGCATTCACTCAACAGATTGAGGAGCTGAAGAGGCAGCTTGAAGAGGAGATAAAG
Seq A exon
GTGAACTGGCTTCTTGTTGTTGGCATGATTATCATTGGTCTTGCAGTTGTTTATACTTACACTGTGTATGTGTGGGTTCCCTGCCCCCCTTTGCTGGTGGGATCTAAGAGCTTAGAGAATAAATACCAATTTAAATGAAAAATTCAACCTCTAAACTCTTATTTTTTTAG
Seq C2 exon
GCCAAGAGTGCCTTAGCTCATGCTCTTCAGTCCTCCCGCCATGACTGTGACCTGCTGCGGGAACAGTATGAAGAAGAACAGGAAGCCAAGGCTGAGCTGCAGAGGGCCATGTCCAAAGCCAACAGTGAAGTGGCCCAGTGGAGGACAAAATATGAGACGGATGCCATCCAGCGCACAGAGGAGCTGGAGGAGGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056328:ENSMUST00000124516:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.325 A=NA C2=0.545
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.5=100),PF0003816=Filament=PU(11.1=80.0)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.6=100),PF0003816=Filament=FE(22.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTCACGCCAGCTAGACGAA
R:
GCCACTTCACTGTTGGCTTTG
Band lengths:
248-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types