BtaINT0097070 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018204 | MYH1
Description
Bos taurus myosin, heavy chain 1, skeletal muscle, adult (MYH1), mRNA. [Source:RefSeq mRNA;Acc:NM_174117]
Coordinates
chr19:30116802-30117280:-
Coord C1 exon
chr19:30117162-30117280
Coord A exon
chr19:30116999-30117161
Coord C2 exon
chr19:30116802-30116998
Length
163 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGC
5' ss Score
5.61
3' ss Seq
ACCAATTGCTATGTTCTCAGGCC
3' ss Score
6.58
Exon sequences
Seq C1 exon
GTGAATTCTCACGCCAGCTAGATGAAAAGGATGCACTCGTTTCTCAGCTCTCAAGGGGCAAACAAGCATTCACACAACAGATTGAAGAACTGAAAAGGCAGCTGGAAGAGGAGATAAAG
Seq A exon
GTTAGCCCTACTTATTACTGTTGTTGTTTCTGTCATTATACTTGCTTTTAAGGTTGTTTTCTGCTTACTTCTACAGATTTTCTTCTGGTGGCCTACAGGAGCTTAGGGACTAAACATCACTTTAAAGATAATAAAATTAAGTCACCAATTGCTATGTTCTCAG
Seq C2 exon
GCCAAGAGTGCCCTGGCCCATGCCCTGCAGTCAGCCCGTCATGACTGTGACCTGCTGCGGGAACAGTATGAGGAGGAGCAGGAGGGCAAGGCCGAGCTGCAGAGGGCGATGTCCAAGGCCAACAGCGAGGTGGCCCAGTGGAGGACCAAGTACGAGACGGACGCCATCCAGCGCACGGAGGAGCTGGAGGAGGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018204:ENSBTAT00000009327:28
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.225 A=NA C2=0.515
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.5=100),PF0003816=Filament=FE(41.9=100),PF0003816=Filament=PU(8.9=62.5)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.6=100),PF0003816=Filament=PD(30.1=42.4),PF0003816=Filament=FE(23.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCTCAGCTCTCAAGGGGC
R:
TCCGTCTCGTACTTGGTCCTC
Band lengths:
242-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development