GgaINT0127797 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:441574-442165:-
Coord C1 exon
chr18:442047-442165
Coord A exon
chr18:441771-442046
Coord C2 exon
chr18:441574-441770
Length
276 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
AAACACTCTTGTTACTCTAGGCC
3' ss Score
6.42
Exon sequences
Seq C1 exon
GTGAATATTCACGACAAGTGGAGGAGAAAGATGCTCTGATATCTCAGCTGTCTCGAGGCAAGCAGGCATTCACCCAACAGATTGAGGAACTCAAGAGGCATTTAGAGGAGGAGATAAAG
Seq A exon
GTGAGGACGTTTTCCAAAATTCTGTCTTATCCAGTGGATTTTCCTGACTAAGAGGTGCTTCAGACAAGCATTTAATGACAGAACTAGTATGATGACATAGATGAAAACAGTGTGACTCTCCATGTTAGCTCTGCTGCTTTTCATTGTTCTTGTTGTGAATACTCAACACTTTCTTCTTCCTTGAAAGGACTTTTTTAATTTCATAAAGAAACAATTTTTGAAAACATTTCAGTTTGAAAGCTTCCATTCATTTTCCAAACACTCTTGTTACTCTAG
Seq C2 exon
GCCAAGAGTGCCCTGGCCCACGCCTTGCAGTCAGCCCGCCATGACTGTGACTTGCTCCGGGAACAATATGAGGAGGAGCAGGAAGCCAAGGGTGAGCTGCAGCGTGCCCTGTCCAAGGCCAACAGCGAAGTGGCCCAGTGGAGAACCAAATATGAGACGGATGCTATTCAGCGCACAGAGGAGCTGGAGGAGGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023832:ENSGALT00000039878:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.424
Domain overlap (PFAM):
C1:
PF0003816=Filament=PD(4.6=32.5),PF0157614=Myosin_tail_1=FE(4.5=100),PF0003816=Filament=FE(41.5=100),PF0003816=Filament=PU(11.8=87.5)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.6=100),PF0003816=Filament=PD(29.8=42.4),PF0003816=Filament=FE(22.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGACAAGTGGAGGAGAAAGA
R:
CTCCTCTGTGCGCTGAATAGC
Band lengths:
293-569
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]