HsaINT0107702 @ hg38
Intron Retention
Gene
ENSG00000125414 | MYH2
Description
myosin heavy chain 2 [Source:HGNC Symbol;Acc:HGNC:7572]
Coordinates
chr17:10526599-10527056:-
Coord C1 exon
chr17:10526938-10527056
Coord A exon
chr17:10526796-10526937
Coord C2 exon
chr17:10526599-10526795
Length
142 bp
Sequences
Splice sites
5' ss Seq
AAAGTAATT
5' ss Score
3.64
3' ss Seq
AGGTGTAACTGCCTCCATAGGCC
3' ss Score
6.1
Exon sequences
Seq C1 exon
GTGAGTTTTCACGCCAGCTTGATGAAAAGGAAGCTCTGGTGTCTCAGTTATCAAGAGGCAAACAAGCCTTTACTCAACAGATTGAAGAATTAAAGAGGCAACTTGAAGAGGAGATAAAA
Seq A exon
GTAATTATGATTCTAAGACTGATTTTTTCCCTCATGAGCTGATTCTACATGGAGCCTGTTATACCAGCTTTCAAAAGGTTTTGAAAGTTAAGAGTTAAATATTTAAATATCCAGTAAAATGAAGGTGTAACTGCCTCCATAG
Seq C2 exon
GCCAAGAACGCCCTGGCGCATGCCCTGCAGTCTTCCCGCCACGACTGTGACCTGCTGCGGGAACAGTATGAGGAGGAGCAGGAATCCAAGGCCGAGCTGCAGAGAGCACTGTCCAAGGCCAACACCGAGGTTGCCCAATGGAGGACCAAATACGAGACGGACGCCATCCAGCGCACAGAGGAGCTGGAGGAGGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000125414:ENST00000245503:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.175 A=NA C2=0.424
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGCTCTGGTGTCTCAGT
R:
TTTGGTCCTCCATTGGGCAAC
Band lengths:
242-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development