BtaINT0097274 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007090 | MYH2
Description
Bos taurus myosin, heavy chain 2, skeletal muscle, adult (MYH2), mRNA. [Source:RefSeq mRNA;Acc:NM_001166227]
Coordinates
chr19:30143951-30144399:-
Coord C1 exon
chr19:30144281-30144399
Coord A exon
chr19:30144148-30144280
Coord C2 exon
chr19:30143951-30144147
Length
133 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
ACATATAACTCTCTTCGCAGGCC
3' ss Score
9.13
Exon sequences
Seq C1 exon
GTGAATTTTCACGTCAGCTAGATGAGAAAGAAGCTCTGGTGTCTCAGTTGTCAAGGGGCAAACAAGCATTTACTCAACAGATTGAGGAATTAAAGAGGCAACTTGAAGAGGAGATAAAG
Seq A exon
GTAACTAGATAAGACTCATTTCCCCCTACCCTGACCCTAATTGGAGTCCATTATACCAACTTTTACAGGGTTTTGAAGCTTAAGAATTAAACACTAAGTATTCAGTAAAATGAACATATAACTCTCTTCGCAG
Seq C2 exon
GCCAAGAATGCCCTGGCCCATGGCCTGCAGTCAGCCCGTCATGACTGTGACCTGCTGCGTGAACAGTATGAGGAGGAGCAGGAATCCAAGGCCGAGCTGCAGAGGGCGCTGTCCAAGGCCAACACCGAGGTGGCCCAGTGGAGGACCAAGTATGAGACAGACGCCATCCAGCGCACGGAGGAGCTGGAGGAGGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007090:ENSBTAT00000012797:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.175 A=NA C2=0.424
Domain overlap (PFAM):
C1:
PF0003816=Filament=PD(4.2=30.0),PF0157614=Myosin_tail_1=FE(4.5=100),PF0003816=Filament=PU(11.8=87.5)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.6=100),PF0003816=Filament=FE(22.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCTCAGTTGTCAAGGGGC
R:
TGGATGGCGTCTGTCTCATACT
Band lengths:
251-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]