RnoINT0096284 @ rn6
Intron Retention
Gene
ENSRNOG00000049695 | Myh1
Description
myosin heavy chain 1 [Source:RGD Symbol;Acc:735061]
Coordinates
chr10:53731846-53732294:+
Coord C1 exon
chr10:53731846-53731964
Coord A exon
chr10:53731965-53732097
Coord C2 exon
chr10:53732098-53732294
Length
133 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATT
5' ss Score
5.88
3' ss Seq
GGTATGACCATCTTCCACAGGCC
3' ss Score
5.84
Exon sequences
Seq C1 exon
GTGAATTTTCCCGGCAGCTTGATGAGAAGGAAGCGCTGGTTTCTCAGTTATCAAGGGGCAAGCAAGCATTTACCCAACAGATTGAGGAGCTGAAGAGGCAGCTGGAAGAGGAAGTAAAG
Seq A exon
GTGATTATTAATCTAAGGCTGATCGCCCCGGTTTGTTCCATGAGTTGACCCTAGAAGGAGCCAGTTCCACCAACTTGAAGGGGACTAGGTACTTAAATATCTAGTACAATGAAGGTATGACCATCTTCCACAG
Seq C2 exon
GCCAAGAACGCGCTAGCCCACGCCCTGCAGTCCTCCCGCCATGACTGTGACCTGCTTCGGGAACAGTACGAGGAGGAGCAGGAATCTAAGGCCGAGCTGCAGAGGGCGCTGTCCAAGGCCAACAGTGAGGTGGCCCAGTGGAGGACCAAATATGAGACGGATGCCATCCAGCGCACGGAGGAGCTGGAGGAGGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000049695:ENSRNOT00000004236:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=NA C2=0.409
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAATTTTCCCGGCAGCTTGA
R:
CTCACTGTTGGCCTTGGACAG
Band lengths:
247-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]