MmuINT0103433 @ mm9

Intron Retention

Gene

ENSMUSG00000033196 | Myh2

Description

myosin, heavy polypeptide 2, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339710]

Coordinates

chr11:67004850-67005297:+

Coord C1 exon

chr11:67004850-67004968

Coord A exon

chr11:67004969-67005100

Coord C2 exon

chr11:67005101-67005297

Length

132 bp

Sequences

Splice sites

5' ss Seq

AAGGTGATT

5' ss Score

5.88

3' ss Seq

AGATGTGAACATCTCCATAGGCC

3' ss Score

5.84

Exon sequences

Seq C1 exon

GTGAATTTTCCAGGCAGCTTGATGAGAAGGAAGCGCTGGTATCTCAGTTATCAAGGGGGAAGCAAGCATTCACTCAACAGATTGAGGAGCTAAAGAGGCAGCTTGAAGAGGAAGTAAAG

Seq A exon

GTGATTATTAATCTAAGGCTGATGGCTGCAATTTGTTTCACGAGTTGACCCTAGAAAGAGCCAGTTCCACCATCGTTAAGGGGACTGAGTATTTAAATATCTAGTACAATGAAGATGTGAACATCTCCATAG

Seq C2 exon

GCCAAGAACGCGCTGGCCCACGCCCTGCAGTCCTCCCGCCATGACTGTGACCTGCTGCGGGAACAGTACGAGGAGGAGCAGGAGTCTAAGGCTGAACTGCAGAGGGCGCTGTCCAAGGCCAACAGCGAGGTGGCCCAGTGGAGGACCAAATATGAGACGGATGCCATCCAGCGCACGGAGGAGCTGGAGGAAGCCAA

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000033196-Myh2:NM_001039545:29

Average complexity

IR-S

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.138 A=NA C2=0.385

Domain overlap (PFAM):

C1:

PF0003816=Filament=PD(5.2=37.5),PF0157614=Myosin_tail_1=FE(15.1=100),PF045827=Reo_sigmaC=FE(27.7=100),PF0003816=Filament=PU(13.2=87.5),PF0157614=Myosin_tail_1=PU(0.7=10.0)

A:

NA

C2:

PF135141=AAA_27=FE(8.8=100),PF0157614=Myosin_tail_1=FE(12.6=100),PF0003816=Filament=PD(30.9=43.9),PF0003816=Filament=FE(23.0=100)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSMUSP00000018641