MmuINT0103211 @ mm9
Intron Retention
Gene
ENSMUSG00000056328 | Myh1
Description
myosin, heavy polypeptide 1, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339711]
Coordinates
chr11:67018065-67018333:+
Coord C1 exon
chr11:67018065-67018157
Coord A exon
chr11:67018158-67018269
Coord C2 exon
chr11:67018270-67018333
Length
112 bp
Sequences
Splice sites
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
3' ss Seq
TCATCTTTTTCCCTTCCAAGGGT
3' ss Score
8.92
Exon sequences
Seq C1 exon
GGGACGCTGGAGGACCAAATCATCAGCGCCAACCCCCTGCTGGAGGCCTTTGGGAACGCCAAGACCGTGAGGAATGACAACTCTTCCCGCTTT
Seq A exon
GTGAGTCTCTTGGTCTTCTCTGTCTTCCGTTGAAACAATATTGGAAGCATTGCAGCACTCCTATCTGTGTGTTTCAAGCTTTGAAGCTAACATCATCTTTTTCCCTTCCAAG
Seq C2 exon
GGTAAGTTCATCAGGATCCACTTTGGTACCACAGGGAAACTGGCTTCTGCTGATATTGAAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056328-Myh1:NM_030679:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGCTGGAGGACCAAATCAT
R:
TGTTTCAATATCAGCAGAAGCCAGT
Band lengths:
154-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: