MmuINT0103329 @ mm9
Intron Retention
Gene
ENSMUSG00000060180 | Myh13
Description
myosin, heavy polypeptide 13, skeletal muscle [Source:MGI Symbol;Acc:MGI:1339967]
Coordinates
chr11:67146003-67148114:+
Coord C1 exon
chr11:67146003-67146095
Coord A exon
chr11:67146096-67148050
Coord C2 exon
chr11:67148051-67148114
Length
1955 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
GTCAACCTGTTGTTGGACAGGGG
3' ss Score
5.24
Exon sequences
Seq C1 exon
GGAACGCTGGAGGATCAGATCATCCAAGCCAACCCCCTGCTGGAGGCCTTTGGAAACGCCAAGACCGTGAGGAACGACAACTCCTCCAGATTT
Seq A exon
GTAAGTCCCAGATGGGTTTTCAACTCCCAACCCAATTACACCCATCTGTTAAATTCTAGACAGGAAAATTTGCTACAGATGCTAAGATACACTGAGCCTTGGTCTACCCTTACAAAATTCAGATCAATTGATCCAAGAGGAGTTAGAAAGGTTTTGGCTTATTCCTGGCCAAAAAAAAAAAAAAAAAGATTTAACCAACTCCCTTTAGCTAGTGAACACCCCTTCACAGTAGGCTGAAGTCACTGAGACTCAGTCAGGCTCCACAAGTAAGGAGAAATCATTTATATCAAATTGGCCTCTGTAGGTGGAAGAGTGTATTTTCTTTTTAAATTTCTCTGCAAGTGTCCATATGCACATTTGAGGAGGCTACAACAAGATATCATCTTTATCACTTTCTATTTCCCTCGAGATAGGGTTTCTCACTGAACTGGATGCTTTTGGTTTCAGCCACAGTCCTAGGCAGCAACCTCTCAGGATCATCTTGGCGGTGTTCTATGTATTACCCATGATGCTGGGGTAACAGGCAATTGGAGTCATGCTTTGTGATTTGAAGTATTTTTTTTTTAACGAAAAAGTTGGTTGACTTAGCCACAGAAACTTCAGTATGACTTAAATTAGCAAACTTGACCTCCTCCATCCAGGTCAGGAGACCCTGGGAGGAGGGGCCAGTGAGTGAGGGCAGGAAAGGAGACTAGAAACTAGAATGGCTTGGTATTACCAATACTGAAAGATATAGTCCAACGTCCAGAATTTCATTTAAGATGAGCTCAACTTATTTACTCCCATGCTTGCACATTAATAAACACTCATTCCTCTATTTAACTGTCCTAGCCAAAGGAACGAGCAGTCAGAGGGTGGCTGTTCTACACACCCAGGTCAGGTTGCTTATTGTGTGGACCTTTAGTGAAGGCAATGCCTTTGGGAACTTTGCATCAGTACACTCTTAGTCATGAGGCCTTTTCATCTGACTCAGAGTCACAATCACATCTGTCTACTCTCATCCAGACTAACCATTCCAGGCTAAGGGGTGACATCCATTGTCCTTTTCTGAGGACTTCTCTAGCTTTTCATAGATTATTCATGAAACTCTGAAAAACTTTTAAGAACTGAACACATTGCAGAATGTATAAGGAAATAAAAACGGCAAGACTTTTGCCCTCAGATGAACTCACAGTATAGGAGAGGGCCAGTTAAGTGCACCAGTGTAAGAAAAAAGTACATACAATGTGCATGCTACTCTTCTAAATTATACATCGATACAATTTTACAACTATGTCATATAAATAACACATAAATAGTTTGTTTATTTCACATTTTGCATATAGTGTTTTATATACGCGTGTGTGTTTGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAGGGATAACACGGAACCTGAGTTGTTCATTTGGGAGATAGGGAGACTGGCCTGGGGCTGAGCCTGGAAGATGGATTTGCCATTAGGAAATAGCATGTAAAACTGAGGTGAGAAATCTTAGAAGTAGCCTCTAGAGGCAAAACAGAAACCAGGAAGACAGCTTTTATGGATTCTAAGGTGTTAGGAAGAGTGTGAGAACACAGAGATGAGACAATTAACACAGACACAGTTCCAAGCAGAGAGTCAGCGAGTGAAGGAGGCAATCCATCAATCCTTGATGTGACCCAAGCAGAGAAATCAGAAAATGAGCCTGCAGGCTTCCCCACAGTTGCAGGAGCAGGGTCAGCACTTTGAGCAGAATTCTCAGAACCTTGGAGGACCCAGTCTGGGAACATGGGTGTCAGGGAACCAGAGAGGAAGAAAGTATCTGTGCTTCTGCCATCTCTCCCAGCCATGCCCCTCTACCCACTTCCTACTCATGGATGGTAGCATCTCTCAGAGAATCAGAGGCAGCAAAAGTAACTTGTTCGTCAACCTGTTGTTGGACAG
Seq C2 exon
GGGAAGTTCATTCGGATCCACTTTGGAGCCACAGGGAAGCTAGCATCAGCGGACATCGAAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060180-Myh13:NM_001081250:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: