GgaINT0129016 @ galGal3
Intron Retention
Gene
ENSGALG00000000779 | MYH13
Description
NA
Coordinates
chr18:328861-329113:-
Coord C1 exon
chr18:329021-329113
Coord A exon
chr18:328925-329020
Coord C2 exon
chr18:328861-328924
Length
96 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
TGATCTCTACAAATTAACAGGGA
3' ss Score
3.77
Exon sequences
Seq C1 exon
GGAACGCTTGAGGATCAAATCATCAGCGCCAACCCACTGCTGGAGGCCTTTGGTAATGCCAAGACTGTCAGGAATGACAACTCCTCACGCTTT
Seq A exon
GTAAGTTCATTTCATTTTTGTTGGAATGCAGACATCTAGCGTATGTCTCATCCATCGATCACTCTGGCCAGGAGGCTGATCTCTACAAATTAACAG
Seq C2 exon
GGAAAGTTCATCCGGATCCACTTTGGAACAACAGGCAAGCTGGCCTCTGCGGATATCGAAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000779:ENSGALT00000001184:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACGCTTGAGGATCAAATCA
R:
GTTTCGATATCCGCAGAGGCC
Band lengths:
155-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]