MmuINT1023809 @ mm10
Intron Retention
Gene
ENSMUSG00000060180 | Myh13
Description
myosin, heavy polypeptide 13, skeletal muscle [Source:MGI Symbol;Acc:MGI:1339967]
Coordinates
chr11:67332501-67334612:+
Coord C1 exon
chr11:67332501-67332593
Coord A exon
chr11:67332594-67334548
Coord C2 exon
chr11:67334549-67334612
Length
1955 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
GTCAACCTGTTGTTGGACAGGGG
3' ss Score
5.24
Exon sequences
Seq C1 exon
GGAACGCTGGAGGATCAGATCATCCAAGCCAACCCCCTGCTGGAGGCCTTTGGAAACGCCAAGACCGTGAGGAACGACAACTCCTCCAGATTT
Seq A exon
GTAAGTCCCAGATGGGTTTTCAACTCCCAACCCAATTACACCCATCTGTTAAATTCTAGACAGGAAAATTTGCTACAGATGCTAAGATACACTGAGCCTTGGTCTACCCTTACAAAATTCAGATCAATTGATCCAAGAGGAGTTAGAAAGGTTTTGGCTTATTCCTGGCCAAAAAAAAAAAAAAAAAGATTTAACCAACTCCCTTTAGCTAGTGAACACCCCTTCACAGTAGGCTGAAGTCACTGAGACTCAGTCAGGCTCCACAAGTAAGGAGAAATCATTTATATCAAATTGGCCTCTGTAGGTGGAAGAGTGTATTTTCTTTTTAAATTTCTCTGCAAGTGTCCATATGCACATTTGAGGAGGCTACAACAAGATATCATCTTTATCACTTTCTATTTCCCTCGAGATAGGGTTTCTCACTGAACTGGATGCTTTTGGTTTCAGCCACAGTCCTAGGCAGCAACCTCTCAGGATCATCTTGGCGGTGTTCTATGTATTACCCATGATGCTGGGGTAACAGGCAATTGGAGTCATGCTTTGTGATTTGAAGTATTTTTTTTTTAACGAAAAAGTTGGTTGACTTAGCCACAGAAACTTCAGTATGACTTAAATTAGCAAACTTGACCTCCTCCATCCAGGTCAGGAGACCCTGGGAGGAGGGGCCAGTGAGTGAGGGCAGGAAAGGAGACTAGAAACTAGAATGGCTTGGTATTACCAATACTGAAAGATATAGTCCAACGTCCAGAATTTCATTTAAGATGAGCTCAACTTATTTACTCCCATGCTTGCACATTAATAAACACTCATTCCTCTATTTAACTGTCCTAGCCAAAGGAACGAGCAGTCAGAGGGTGGCTGTTCTACACACCCAGGTCAGGTTGCTTATTGTGTGGACCTTTAGTGAAGGCAATGCCTTTGGGAACTTTGCATCAGTACACTCTTAGTCATGAGGCCTTTTCATCTGACTCAGAGTCACAATCACATCTGTCTACTCTCATCCAGACTAACCATTCCAGGCTAAGGGGTGACATCCATTGTCCTTTTCTGAGGACTTCTCTAGCTTTTCATAGATTATTCATGAAACTCTGAAAAACTTTTAAGAACTGAACACATTGCAGAATGTATAAGGAAATAAAAACGGCAAGACTTTTGCCCTCAGATGAACTCACAGTATAGGAGAGGGCCAGTTAAGTGCACCAGTGTAAGAAAAAAGTACATACAATGTGCATGCTACTCTTCTAAATTATACATCGATACAATTTTACAACTATGTCATATAAATAACACATAAATAGTTTGTTTATTTCACATTTTGCATATAGTGTTTTATATACGCGTGTGTGTTTGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGAAGGGATAACACGGAACCTGAGTTGTTCATTTGGGAGATAGGGAGACTGGCCTGGGGCTGAGCCTGGAAGATGGATTTGCCATTAGGAAATAGCATGTAAAACTGAGGTGAGAAATCTTAGAAGTAGCCTCTAGAGGCAAAACAGAAACCAGGAAGACAGCTTTTATGGATTCTAAGGTGTTAGGAAGAGTGTGAGAACACAGAGATGAGACAATTAACACAGACACAGTTCCAAGCAGAGAGTCAGCGAGTGAAGGAGGCAATCCATCAATCCTTGATGTGACCCAAGCAGAGAAATCAGAAAATGAGCCTGCAGGCTTCCCCACAGTTGCAGGAGCAGGGTCAGCACTTTGAGCAGAATTCTCAGAACCTTGGAGGACCCAGTCTGGGAACATGGGTGTCAGGGAACCAGAGAGGAAGAAAGTATCTGTGCTTCTGCCATCTCTCCCAGCCATGCCCCTCTACCCACTTCCTACTCATGGATGGTAGCATCTCTCAGAGAATCAGAGGCAGCAAAAGTAACTTGTTCGTCAACCTGTTGTTGGACAG
Seq C2 exon
GGGAAGTTCATTCGGATCCACTTTGGAGCCACAGGGAAGCTAGCATCAGCGGACATCGAAACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060180:ENSMUST00000108684:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types