HsaINT0107579 @ hg19
Intron Retention
Gene
ENSG00000006788 | MYH13
Description
myosin, heavy chain 13, skeletal muscle [Source:HGNC Symbol;Acc:7571]
Coordinates
chr17:10258401-10261144:-
Coord C1 exon
chr17:10261052-10261144
Coord A exon
chr17:10258465-10261051
Coord C2 exon
chr17:10258401-10258464
Length
2587 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGA
5' ss Score
3.14
3' ss Seq
GTCCACCTGTTATTGGACAGGGG
3' ss Score
4.91
Exon sequences
Seq C1 exon
GGAACCCTAGAGGATCAGATCATCCAGGCCAACCCACTGCTGGAGGCCTTTGGAAATGCCAAGACTGTGAGGAATGACAACTCCTCAAGATTT
Seq A exon
GTAAGATCCGGCCCAATTTTCAAGTATCCTCCCAAAAGCATACCCTCTCCTGAAATGCTGGATATGAAAAACTGCCCCATAAACTGGAATATATGGGGGCCTTTTTCTACCCCCAAGTGATTGAGATCAATCTACCCACCTGGAATATTGTGATACACTTTGAGGAAGGTGTTGGCTTGGTCCTGGCAGAGGGAGGATTTGCCGTCCTACCCTAACTAGGCAATGTCACCTCACAGCATCCTGAAGTCACTCACATGATTCAAATCCCACAATTAGAGATCAACTTTATGCTAAAATGGGTCTCTCTGTGTGGAAACATTTTAAAATGTTAACGTCCATTAAGCCATATCTATTGGTCTAGCCACGGAAACCTTAGTGTGAATTAAGTTAGCAGATTTGACCTCTTCCAACTCAGTAGGGACTGGGAGCAGGGAAAACCTAGTGAAGGCAGAAGAGCTCAAAAATTTGAAATAGTCTGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGGGGGCGGATCACTTGAGACCAGGAGTTTGAGACGAGCCTGACCAGCATGACGAAACCCCATCTCTACTAAAAATACAAAAAATTAGCTGGGCATGGTGGCACATGCCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGTGGAGGTTGCAGGGAGCCGAAGTTGCAACACTGCACTCCAGCCTGGGCAACAGAGGGCAACTCTGTCTCAAAAAAAAGAAAAAAATATTGGAATAGATTCATACTGAAGATATTGAAGGATATATGCCATCCTTCAACTTTTTACTTAGGTTTGGCTTAATCAAAAAGACATTTACTTCCCATCGGAAATAAACACACATCCAGCCCTCTATTTCATTTCACTGGCCAGTGGAGCAAGTACTCAGAGGCAAAGCCATCATTTGTGCCTATGGTTGCAAAAGTACATTAAAACTTCACACATCTTAATAGTTGGATAGTCTCAAACTTGTATTTCGTCGCCTGAAAGATAAAATGGTTATCAATGAGGAAGTAGGTAATCCATCAAGGACCATGGCTCTGAGCCTTGACTTTTGTTTCCTTGGATATGTTCTTTGTACCCTGTGCACTGCCAGTTTGCACCTGTATCCTCCCCAGTGCCCAAATAAACTCCTCTTCCTTGTGGAAGATCTGGGCACATGTTACATGGCAGAGGTATGTTACCCATGCCTGGACCAAGTTAGTTATTGCACTGGCCTGACACCAGCTTAAAGTGAAAGACAATACCTTCAGGCACTCCCTCTTCTCATTCCCATTTACTTAGTTCATGGGCCTCTACTCTTAGCCCTGACCCAGAAGTCACAATCATTCTAATTATTTTGTCCTCTTTCCACCCTCCAAATATTTGCAGGCTAGGGATGACTTCCATTGTCTTCTGTTAAGCCGCTAAATATACTGAAGACACAGCACTTACAGTGCACATGTGCCTTTACTGATCCTTCACTAACTTTTCCTGGGGTTCATTCAGAAAATATTGAGGCTAGTACTAAGTACCATCCACATTTCAGACACTGTGGGTGAAAAAGCAAGAAAACATTTTTTGTCCTCAAATTTGCGCACAGTGTCGTTGAGGACCAATTAAGCAGATAATGTATGAAGCAGGTGCATACACACAAACACGCATATGAAATTTTACCTCCCACTCCCCAGAAAGTGGGCCACCTAGACCCTGAGTTGTTCTTTTGGCAGCCAGGGAGCCAGGCCTGAGCCTGAGCCCGGGCCTCTGAGCCAGATTTGTCTGTAGTCAGCCATATGTGAAACTCAGGCAAGAAATCTCAGAAGTAGCATCTATTAAGATACAAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTCAGACAGAACAATCCAACCAGTTACAATTAAAAGGTGTTATGAAGATTTAAGAATCCAGGTATAAGAGAACAGGATGAAAACCAGGCAGGCAGTCAAGAATGGAGTAGTCCCAAGAAGAGAGCTGGAGAAGGAGCCTGTGGGCATCCCCTGAGTTGTGGGAACAGGGACAGGTGCTTGGGTAGAGCTACCTGAGTCCTTGCTGACCCAGCTTGGGAGCACTGGGCACCCGGTGGAGAGGTGCCCATGTTCTGGCATCCCTTCCTTCTGAGCCAAGGAGAGGTCATGGTGGCCAATATCAATGACAGTGAAGAATTGTTGGCGACAGATGTAAGCATGCCATTTATTTGTTTGTTTACGGACAGAATTATTGAGTTTATGAACTGAGAGACATGTTAGTGAGCTAATGGGAAAACTGAAATCCAGGGATACTAAGTGATTAGACTCAAGATCTCAGACATCAAGGGCTCAGAGAATCAGCACAGATTGGCCCCTCCCTACTCAGCTCCTCCTCACAGCATTCCAAAATGCAAATCCAGAAGGTTCACCAAAGCAGGCCTTCAGTTCTGTTCTCTAGCATTTTTGCATTTATAATTTATCTGTGGCAGCACCTATCTAAGGCCAGCCACAAAACCATATAAATCAAATAACCGTAACATTTGTCCACCTGTTATTGGACAG
Seq C2 exon
GGGAAGTTCATTCGGATTCATTTTGGAGCCACAGGAAAGCTGGCATCGGCAGACATCGAAACTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006788-MYH13:NM_003802:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(3.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)