Special

MmuINT0103434 @ mm10

Intron Retention

Gene
Description
myosin, heavy polypeptide 2, skeletal muscle, adult [Source:MGI Symbol;Acc:MGI:1339710]
Coordinates
chr11:67173096-67173568:+
Coord C1 exon
chr11:67173096-67173319
Coord A exon
chr11:67173320-67173424
Coord C2 exon
chr11:67173425-67173568
Length
105 bp
Sequences
Splice sites
5' ss Seq
GCGGTGCGT
5' ss Score
8.66
3' ss Seq
TTATCTTTCCTGTTTACTAGACC
3' ss Score
8.75
Exon sequences
Seq C1 exon
GGTCTGTGAGTTCAGCAGTCATGAGCTCCGACGCCGAGATGGCCGTTTTCGGGGAGGCTGCCCCTTACCTCCGGAAGTCCGAAAAGGAGCGAATCGAGGCCCAGAATAGGCCTTTTGATGCCAAAACATCTGTCTTTGTGGCGGAGCCCAAGGAATCCTTTGTCAAAGGAACCATTCAGAGCAAAGATGCAGGGAAAGTGACTGTGAAAACAGAAGCAGGAGCG
Seq A exon
GTGCGTAGGGAGCCTGCCACGGTGTACCTGTTAGGTTTGTGCTGCATTTGGCAGGGTTGGTCACTCGCTGACTTGACACCAATAGTTATCTTTCCTGTTTACTAG
Seq C2 exon
ACCCTGACCGTGAAAGAAGACCAGATCTTCCCCATGAACCCTCCCAAGTACGACAAGATCGAGGACATGGCCATGATGACCCACCTGCACGAGCCCGCTGTGCTGTACAACCTCAAAGAGCGTTATGCAGCCTGGATGATCTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033196:ENSMUST00000018641:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion (1st CDS intron)

No structure available
Features
Disorder rate (Iupred):
  C1=0.059 A=NA C2=0.000
Domain overlap (PFAM):

C1:
PF0273614=Myosin_N=PU(78.6=48.5)
A:
NA
C2:
PF0273614=Myosin_N=PD(16.7=14.6),PF0006316=Myosin_head=PU(4.1=58.3)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
Zebrafish
(danRer10)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAATCGAGGCCCAGAATAG
R:
TTGAGGTTGTACAGCACAGCG
Band lengths:
252-357
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types