MmuINT0103491 @ mm9
Intron Retention
Gene
ENSMUSG00000057003 | Myh4
Description
myosin, heavy polypeptide 4, skeletal muscle [Source:MGI Symbol;Acc:MGI:1339713]
Coordinates
chr11:67051531-67054329:+
Coord C1 exon
chr11:67051531-67051581
Coord A exon
chr11:67051582-67054086
Coord C2 exon
chr11:67054087-67054329
Length
2505 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
ATTCCCATTTCTTCTTCTAGGTG
3' ss Score
11.53
Exon sequences
Seq C1 exon
AGTACTTGTCTGACTCAAGCCTGCCTCCTTCTTCATCTGGTAACACAAGAG
Seq A exon
GTAAGAGAAATTTATTATTACCTTCCAGAGAACAAAGGGCTCTCGCTATTGTTAAGTTTTAATGAGTAACTGTTTTATTTTCTACCTTATTATTGGGCATAGGAGCAACTGGTCTTCATAAGTAGCTTCTCATGAAACTTTGCCTTTTATTTTATTTTATTTTTTTATCTTTTTTTTAAACTTTGCCCTTTAAAGCCAAACAAATCTTTATGCAATTAATTTAATCAAACAAAACTTTATGCAATTCCTCTTTTGCATTTTGTTGGGAGAAGGCAACCCTCATGTATATTTAATATATGTAGAAAAAAAAACAACGTTGCACCAGAAGTCAAAATTCCTGGGTGCCAACCTAGGCTTTTCACCAATTCAACTCCTTGGGTCACGCCAGCTAGCTTTTACGTGTCTTCAAACATGTGTGTTGCAAGAGCATTAACACTAGACGTGGACTTAGACAGCCGGGCTCATAGCTCGTCACTGCCTTTTACCACCTCGGTGACCCTGAATGACCCTTTACCTTGCTGAACCTTAGTTTCCTCATCAGTAAAATCAGAAGGGCAGATTCAAGTCGGCTGCTAATGTCCCTCTGGCTCTTGTTGTCTAAGATCTAAGTCAGTGGTTGCCAACGACTCTTCCATCAATCAAAACGCTCAGTGGGTCTCCTGTCTTCTGCATGAGGAGATGTACATGAAGAACATATAAATGAAGAAAACTTGCTATGTATTTAAGCAAGTTCATAGTCAATATATTAGGTAATATCAATGTAGAAAAAGTAGCAAATCTATTGCTTCCAAGGGAATAAATGTTGCTTGTTGACACTGGAGGTGATACCACTGTGTGAATAGAGCCCAACACCACACAACAAAGTCCCTTGAAGGCGAGTGGCCTAAAGGTGACAAAGGACTGCTGAGGCAAGAGCAGAGAGTTAGTGTCCTTCCTGTGCCCCAGGATCTACTGCATAACAGCAATCACTAAGGCAGAGTAATCGATTCAAAAGTGCTTCACTTAAAACCCCACAAACAAGGTCATGGAATAGTGTTTGAAGGGAAAATGCTAACACCAATGTTTCAATATCTGTCCCTTGAAAACAGTTCTCAATTTCCACATCTCCCCATAAGACATTTGTTGATTCTAAGCTACAGCATGGGGAAATTTTTGTATCTATTTTGAGAAGAGATGCACTGATTCTAACAGTAGACTGAGATGTTTTATGGAAAGTCTATGAAAGATTAGAGCCTTTGTCATCACCATCAGTCACTAGCACCTGCATGCTCTTCCGGACTGCTCCTCTTCCACTCCAGAGGTCACCAGCTCTTACTCCGGCCAGAGAGGGAGTTATTTTATCTGACCAGGATTTGTCAGTTGGAAAAAAAAAGTTGTGAATTGGTTTCAGTTTGAAACCTCATAGTGGCTATCAGTTTCAGGAGAGAAATTAGAAAGGTGATGTTTTCAAAGAGAGAGGGTAAGAGAGAGGGAGGCCATAAGCCTGACGCAGTAAGGACCGGGCAGAAACAAGGGGTTGGGGGAGGCTGAAACAAGGGGTTGGGGGAGGCTGAAGCCAGTATAAACTGGCAAAGACAGACTTTGATAGGGGACCACTGGGCAGTCTCATTAAAATGTAGATGCTTTTTTTCCTTAAGTAATTCTTCAGCGTTATTTGTGCTCAAGTAAGAGTGACAACTTATGCATAGTTTAGAAACTGACAGGAGGGACTTGGTTTTGACCTGGAACAAAATCATTTTTCATTAATTTACAGTTTTCCTTATACTAATATTTTATTACTATCCATTGTGCTTATTTTTTTCCTTTATTTACTTAATTTTTGTTAGTTAACTACAAGTTTTTGTGCATAAAATATTCAACCTGAATTTAGATTTTTTTTCTTACATAAAAACTTAAGGATTTTGGCATTCAATTTTAACAGTTGTGGCAAGGGAAATGGCTATTTTTTTTTTTTTTAGACAGTATTTCTTTATTATGTAGCTCTGGCTTTCCTGGAACTATGAAGGCTGGGCTCGTCTCAAACTCATAGAGATCTGCCTGCCTCTGTCTCCCAAGTGCTGGAATTGAAAGTGTGTACCATCACACCAAGCAATATTTAAGTTTTAAAAAATAAGTTTATTAAGATGAAACAGAAACAGAAACGTTATTTTCTATGTCTTTCTATCATCACAATGACAAACAAACAAACACATGGAACAGATGGGCAGGGAAAGGAAAGAATACACAGAAACAACAACCTGTAGCCTGACAAGTGTCGTTGGATGGCTAGCATCCCCCTCCCAGCTCTCAAATGTGGTTTATAATACAGAAAGAAGAACCAGAGCTTAAAATATCTCAAAAAATTAAACTATTAACCCAGAACCATTAGGTACTCTTGTCTTCTCTTAGCTCCCTGGCACACTCCACAAGACAAACCCGAAATAGCATAAGAGAGTGGCAAACTAGCCATGTTAATGTGGAGACCCACAGGTCAGGGTTATCATTCATTCCCATTTCTTCTTCTAG
Seq C2 exon
GTGCACCTGGCCCTGAGCTGCCACCAATAGCCCGCAGCCATGAGTTCCGACGCTGAGATGGCCGTTTTCGGGGAGGCTGCTCCTTACCTCCGGAAGTCTGAAAAGGAGCGAATCGAGGCCCAGAACAAGCCTTTTGATGCCAAGTCATCGGTGTTTGTGGTGGATGCTAAGGAGTCCTATGTGAAAGCAACAGTGCAGAGCAGGGAAGGGGGGAAGGTGACAGCCAAGACCGAAGGCGGAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057003-Myh4:NM_010855:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.191
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0236813=Big_2=PU(82.1=94.1),PF0273614=Myosin_N=PU(78.6=48.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: