HsaINT1024107 @ hg38
Intron Retention
Gene
ENSG00000264424 | MYH4
Description
myosin heavy chain 4 [Source:HGNC Symbol;Acc:HGNC:7574]
Coordinates
chr17:10466542-10469336:-
Coord C1 exon
chr17:10469288-10469336
Coord A exon
chr17:10466785-10469287
Coord C2 exon
chr17:10466542-10466784
Length
2503 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
GGCTCTGTTTCTTCCTCTAGGTA
3' ss Score
12.17
Exon sequences
Seq C1 exon
TAGTTGTCTGCTTTGAGCCTGCCACCTTCTTCATCTGATAATACAAGAG
Seq A exon
GTAAGAATAATTTATTATTACACTCTAAAGAACAAAGGAATCTCTATATTGCTACATCTTAATGAGCTACCATTTTATTTCCTAGTTTAGTATTGGGAATAGGATATCGGGGCAGCTGTTCTTTAAAAATGCCTTCTCATAAAATTTTGACTTTTCAGGCCACTTAATCAAACAAAACTTAATGAAACTTCTCTTTCACATGTTGTTAGAACTACAGAAAGAATGCAGCCATCATATGTAATATTTAATGTGAACTACTACTCCAACTTAACCCATAAAGATATATCAGAGAGACCGCATGATAAAATCAAGGTGTGTTTATCTGGAAGTCGATATTTCTAGGTGCCAATCCAGGCTTTTCACTGATTCTATTTGCCTGGGTCAAGCCAGTTAGCCTTTATGTATCTTGAAATACAGTGTGTTGCAAGTGGAATTAACAAACCTGCATTTAGCGGAACAGGACTCATGTCCCAGTACCGCCACTTATCACCCACCACTATGACACTGAATGACCCTGAACCTTTCTAGGCCTTAGTTTCCTCATCAGTAAACGAGGAGGCTGGATTCTATTGACTGCTAAGGTCCTTCCAGCTCTTGCCAACTGTGATTGACGTCAGTGGTTTTCAAGGACTCCTCCACAGAATCAAAACATTTAATGGAACCCTGCTAATGGAGAATCAAAACTAATGGAATCCTGCTAATTGTTCATGTGGAGACATGTACTTTTAGTATGATGTTAAGGATATATATAATCATGAAAACCTATTCTACACTTAAGAATTATTTTAAATGAGTTTATATTTAACATAGCAGCTATATTCATTTAGAAAAGAACAGAAAACACTGTTCATGTGGAAATGTTCCTTCCTTAAACTTGAGGCAATGATCACTGTGTGGGTGGATTCAAGAACCCCCTGCAACAACCTGAGGCTCTATTGGGGCTTGATCCCCAAGTTGGGAAACAATTAATCTATAATAAGACAGGAGATGGGAAGGGTAGCAATCATCTTTCTGTGTTTCCTGGATACACTGCATTATAGTAACCTCCACGTGGTAGTGTGTTGTTAATTCAAGTTGCCTGGTGTAAAAACAAACACAGAAACAAAATATAATGTAATATAAATAACATTTCTTCTTCAAAGAAAAAAAACCTGACATTAAATGTTCCAATATATATCCCCTGAAAATATGTCTAAGTTTCACAGTGTCATCAGGACACTTTTACAGATAAGACTGATTTTGAAAATAGAGTATGTGGAAATTCCATAGCTAACATTTTAAGTTGAGGGAAAGTTAATGCTGATGACAAAAGATCAAGACTCTGGAAAGCCTACAGAAGGTGGTGGCTATTGCTGTTGTCGCCATCATTGCTGTCATTGTCATTGGCAACCAAGACACTTCTGCTCCACAGAGGTCACCTTCTTTTATTCTGGCCACTCACCCTGTCCTTGCCATCAGGACAGCAGGACTTATTTTATTTTCTCATAATTAATTTGTCAGTAGGGAAAATTTTTTAAGTTCATTTTGGCTTGAAACTTTATACTGGCTATCCATTTCAGAAAAATATTTAGAAGACTGGTTGGTATTTTTAAAAAGAGGAGAAGAAAGAACGAGATTATAAACCTAAGAAAATAAGAATCAGATTTTAAAATATGTTAGGTTGAAATCCAACTAAAAACAAAGAGAAATACAGATCAACACATACAATCACTATAAAATTTTATTAAAAATTAAGAAGTTCCTTTTCTCCAAGAATCTTTTAAAGTTGTTTTTGGTTTAGATACTACTTCTGACTTTCAAACAATTTCAAAACTAATAAAGGAGATTTTAATTTTAACTTAGGGCAAAATTATATGTTGGATATTCAGCTTTCATTGTAGTTATTTTTTCCTTTACTTACCTAATACCTGTCAGTTAACTAGGTGTTTATTTGTAATGATTAGATCTGGACTTATGTCCGGAAAGAACAGGTGTATCTGTCTACATTCAATTTTAGTAAATCTGACATCCAATTTTAATAATTTGGGATGAGAGGAAAATTTGCATAAAGATCTGTATTTGAGTTTTTAAGACAGGTTCATTTATATTGTAAAGCCAGTGGAAACAGTTATTGTCCATTTCTTTGTATCATCACGATGTTAAGAGGGGGAAGTTGGAAATAAGAAAGAAAAGAAAAGTAGCAAGAAAAAGAAAAAATTCTGAACATGCTTGGAGCATCACAAATGTTGCTGATTGAATGTTGATTCCTCCACATTTCTCAACTAAGGTTTACAACATAGAGGATGGAACTTAGGCTTAAAGTATCACAAAAATTAAGCTATCAACATAGTGCTTTCAAATCAATGAGCTGATCTCTCAGCTCCTTGACATAGTATACAGGAGTGGTCCCTAAAGGCAGGGGTGAGGAAACAAGCATGGAAAATTAAGCACATTAATATGAAATCAACAGAACAATTCTCCACCCCAACCCTGAATCATCATTTGGCTCTGTTTCTTCCTCTAG
Seq C2 exon
GTATACCTAGTCCAGTACTGCCATCAATAACCTGCAGCCATGAGTTCTGACTCTGAGATGGCCATTTTTGGGGAGGCTGCTCCTTTCCTCCGAAAGTCTGAAAAGGAGCGAATTGAAGCTCAGAACAAGCCTTTTGATGCCAAGACATCAGTCTTTGTGGTGGACCCTAAGGAGTCCTACGTGAAAGCAATAGTGCAGAGCAGGGAAGGGGGGAAGGTGACAGCCAAGACCGAAGCTGGAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000264424:ENST00000255381:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.103
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0273614=Myosin_N=PU(78.6=48.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains