GgaINT1004434 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1P3X4]
Coordinates
chr18:398621-399588:-
Coord C1 exon
chr18:399545-399588
Coord A exon
chr18:398859-399544
Coord C2 exon
chr18:398621-398858
Length
686 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
3' ss Seq
GGTGTGTTTATTCCCTTCAGCCC
3' ss Score
6.5
Exon sequences
Seq C1 exon
CACTGACCAGCATCCAGCCTGCGAGCCACTTGGTACCACAAGAG
Seq A exon
GTAAGACACTGATTTACATATTCCATAGGAATAGACTGTGCAAGAAGAGTTTTATGCAGCTATGTGGGCACTTGCTACAACCCCTTAGATCAGTACAAATTAATGCAGTGCATTCCTACCAGGGTTTGCTGTCTAAAACAGCATTATTTTTTTCATAAAACATCCTATAACTGCTGGCAAATATTTAGTCTCTTATCAAACAGAACTATTAATAAGAAATTGCCTGTGATTAGAAATTCATGAAAGAGAAGATGCACTTCTCAGATTGCTCTGAATATTTTGTATTGAAAAGTTTCCTTATTTTGGTACTGCTTAATCTTAAAGGATCAGTTCAAAAGGAGAAGGCAGAAAAAGAAGAGAAGCTAGAGCTCCAATTTCTAACTCAGGAGACTGTCTTGCTAGGACCTAAATTTGCAGCAATTTTCCCCTGTAGGCTACTGAAAATATAATCGATGTAAAGAATAGAACATGAAAACTGGAAATAAGAGAAAAAAGTAAAAAATATCTAAATCAAAGACCTCTGACATAGCTGAGATCTAAATAAATTAAAAGTAAATGTAGGGGAGAAAAAGATTAGACAGGGAGGGAAAACTCAAGAATGGATAGGGCAGAACACTGTAAAGTGATGTGTAGTACAAAGGCATTTCCTCCTTCTCACAGCACTTTGGTGTGTTTATTCCCTTCAG
Seq C2 exon
CCCCCTGCTGCGCTGAACAGCATAAACAGCAGCCATGTCATCAGATGCTGAGATGGCCATATTTGGGGAGGCAGCCCCTTACCTCCGAAAGTCAGAAAAGGAGAGGATTGAGGCCCAGAACAAGCCTTTTGATGCCAAGACATCAGTCTTTGTGGTACATGCTAAAGAATCCTATGTGAAAAGTACAATCCAGAGTAAAGAATCGGGGAAGGTCACTGTCAAGACTGAAAGTGGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028102:ENSGALT00000001420:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.162
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0273614=Myosin_N=PU(78.6=48.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGACCAGCATCCAGC
R:
TCCACTTTCAGTCTTGACAGTGAC
Band lengths:
279-965
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]