BtaINT0121940 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021250 | RALBP1
Description
ralA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:9841]
Coordinates
chr24:42067305-42069196:+
Coord C1 exon
chr24:42067305-42067654
Coord A exon
chr24:42067655-42069034
Coord C2 exon
chr24:42069035-42069196
Length
1380 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAC
5' ss Score
7.29
3' ss Seq
CAAATCCTTTTTTTTTTTAGATT
3' ss Score
9.46
Exon sequences
Seq C1 exon
GAATTAAATCCAAGGTGGATGAGCTGAAAGCAGCCTACGACAGAGAGGAATCTCCAAACTTGGAAGAGTATGAACCGAACACGGTGGCCAGTTTGCTGAAGCAGTACCTGCGGGACCTGCCTGAGAACCTGCTGACCAAGGAGCTCCTGCCTCGCTTCGAGGAGGCGTGTGGCCGGAGCTCGGAGGCTGAGAAGGTGCAGGAGTTCCAGCGCCTGTTGGAAGACCTGCCCGAGTGCAGCCGCCTTCTCATCTCCTGGCTCATCGTGCACATGGACCATGTTATTGCCAAGGAACTGGAAACGAAAATGAACATCCAGAACATTTCCATAGTGCTCAGCCCCACTGTGCAG
Seq A exon
GTACACAGCCTTCCCGGCACACATGTGGGCCCTTGGGGTTGGGGCGAGGGTGCTTCCCATTGCCGAGTCATACCAAGCAGTGTGCCAGGGACAGTGGGCAAGGGCTTGGCCTGAGTGTGGATGGTGTTGACGTGAAAGCTGGTGAGCAGGTTGGCCTTTGAGCTGTGCCTGTGGAATATGAGTATTGTCCAGGTTTGGGTGTAGGGTCTGTAAGCAGCTCCTGATGACAGTGACCTGTCCTTAGTGGAGGAGGAGCCAGGGTACCTGCAGTCCCAGTTCATCCGCAGAATTTTGAAGATTTCAGTTACTCCATCAAATAGCATTACTGCTCAATCATGTCACATAGACATTCAGACTCAGGCCCAAGGGGGCCTAACATTATTCATTTGGTCAGGGACTTAACCTGAAGAATTCAGTCATGAAGATTATATAAAGTATTGTATAGAATCTTAACCTGGGGAGGCATTTCAAGGAGGTGGGTGGTGATTCTTTATAACGTAAATTCCTGGTCTTCGCTTCCTGCTACTCACTTGGTGCTGGCATAGAATGTGTGAGTTCCTTTATTGGAGTTACTGATATTTCACTCTGGCCAGAAACAGAGGGCAGAACAATGAGAGGGGTTATAGTTTTTGTTTTAAGCCCTCTTGGTGAATACACCAGGTCACTTGTTGGTCACTGTTATAGCACACTGCTACGTATAACAGTGTATTTTCTTTCACTGAAGATTCCTTCATTGCTCATTGCTTATAGCTTGGAAACAAGATGTTCCTTAAATTTCCTGTTAGTTAAGTTTTCAGAATTTGGTAAATATTACATTGTTACTTAGCATTTCTATAATAGGGATGATGGTGTCACAGAAAATGCAGGTGTGTTGTCAGAGTAAGTTTTAGATAGGAAACAGTTTCTTTTATCAGCTATTTAGCCACCTAACATCCTGATGTCTTAGCTCCTCCATCCTGAGCTTTGGAGTTTCCTGGAAGGTGTTTGTCCCTGGAGTGGGGATGCCCATGCTCAGCCCACCTCTGTAGCCACAGGCTCCCCTGTTTCTCAGTTGATCCGTCGCGTGTGTTAGAATGCCTCATAGTAACTGGAAAATAAAGAACATAGGATTTAAAAACTCAGTTAATGCTCTAGGGCTAAAACAGAATAAATCAATGATAATCAGCCTCTGCGTCCCTTTCTTGGCTTTTCCCCCAGTCCCTCATAGTGCTGAGTCTACCACTTAACCTGTACTTTATCATTCTCTTCTTTAAATTGGCCATTAAGTAGCGAAGCATGTCTTGTGACTCCTGAAGATTAAAGAAGGTACTTAGGCAACAGACACAAATGAAATGAAACGATGATTTTAATATTTTTCTTGCAAATCCTTTTTTTTTTTAG
Seq C2 exon
ATTAGCAATCGTGTTCTGTATGTGTTTTTCACACATGTGCAAGAGCTCTTTGGAAATGTGACACTGAAGCAAGTGACGAAGCCCCTGCGATGGTCTAACATGGCCACAATGCCCACACTGCCTGAGACCCAGGAGAGCATCAAGGAGGAGATACGGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021250:ENSBTAT00000061174:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.148
Domain overlap (PFAM):
C1:
PF097264=Macoilin=FE(20.5=100),PF0062022=RhoGAP=FE(79.5=100)
A:
NA
C2:
PF097264=Macoilin=FE(9.4=100),PF0062022=RhoGAP=PD(2.1=5.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGAACCTGCTGACCAAGG
R:
GCATTGTGGCCATGTTAGACC
Band lengths:
342-1722
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]