RnoINT0123822 @ rn6
Intron Retention
Gene
ENSRNOG00000013461 | Ralbp1
Description
ralA binding protein 1 [Source:RGD Symbol;Acc:621134]
Coordinates
chr9:113589005-113591229:-
Coord C1 exon
chr9:113590880-113591229
Coord A exon
chr9:113589167-113590879
Coord C2 exon
chr9:113589005-113589166
Length
1713 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGG
5' ss Score
10.88
3' ss Seq
ACTAAATCTGTTTTCTGCAGATC
3' ss Score
9.13
Exon sequences
Seq C1 exon
GAATCAAATCAAAGGTAGATGAGCTGAAAGCAGCCTATGACCGAGAGGAGTCTCCAAACTTGGAAGAATATGAACCTAACACTGTAGCCAGCTTGCTGAAGCAGTATCTGCGAGACCTTCCCGAGAATTTGCTTACCAAAGAGCTTATGCCCCGATTTGAAGAGGCTTGTGGGAGGACCACAGAGGTGGAGAAAGTGCAGGAGTTCCAGCGCTTGCTCAGGGAACTGCCGGAGTACAACCATCTTCTGCTCTCCTGGCTCATTGTGCACATGGACCACGTCATCGCGAAGGAGCTGGAAACCAAGATGAACATCCAGAACATCTCCATAGTGCTGAGCCCAACCGTCCAG
Seq A exon
GTACGGTGCTGCCACACGCACTCGGTGTAACTGTCCGGGTTCGGGTGTAACCGTCCTGGTACGGGTGTAACCGTCCGGGTACGGGTCCTGTCCACACACACTCTTTTGGTGCTGTTACTGGGAAATTAGAGAACATGTCTGTGGCTGACTCGCAGATAAAACAGTGACTCCAAGGAGGATATTGCGTCAGCCTGACCACAGATCTTCTCTGGCCATGTGTGGGCAGTGCCACCATGGAGAGATAGGAGCATAGTTTGTGGAGTGTGAATGTGCTACCTGCTTGGATCAAGCACAAAGGGCTGTGGTGTTTGCTTGGCAGGTCTGACTGAGGACTTCACCTGTACGATGGATCCCGAGAGAGGTGCTGTGTTGCCTCTCAGTCTGAGAAGTCAGTTAGGGAGTTAAGTGGAACATTGCTTGTGTTTTCGTTTTACTCACATGCATATCTGGCATCCTGTTGTATATGTGTGTTCATGTTTGTATGTGGGAATTGCGTGTGTGTAGCCATACATGTAGATGTATGCATGTTTATGTGGCGGTCATAGGACAACATTGTTCCTGTTCCTTAGGCACCAACCGTCCACCTTTCTTCTTATATAGGGTCCCTCGCTGGCCGGCAAGCTTCAGGGACCCTGCATAGGTGTGCACAACCATGCCCAACATTTTTTTAAGGTGAATTAGGGATATTGAACTCAGGTCTCTATGTTTGCATGACGAACGCTATCTTCCTGGCCTACGGTGCCTGTGTCACACTCTACTCAGTTGATTCCTCAAAGAAAGTCTTTAGAAGAGCTGATATTCTATGTGTCAGAGAGAGGGGGGGACGGATGAAAAAAGGAGACAGTGACTCTGTTTTGTTGTTCTTTGTTTTTTGTTTGTTTGTTTGTTTTCCGAGGCAGGGTTTCTCTATGTAACCCTGGCTGTCCTAGAACTCACTCTGCAGACCAGGCTAGTCTTGAACCCACTCAGATATCCTCCTGCCTCTTCCTCCCAAGGTGTGCACCACTCTAATATTTAATTAAAGTCCTCTTTTTGGTTGGTATGTGGGGTCCTGACCATATGTCATTATGCTCTATTATAAGAGGATACTTTGTTTTGCTAAAGATATTTTCATTAGTTATTAGTTAATATTTTAAAAACTTTCTCATATTTCCCAAATATTATGATCATTTTTGTTAGCCTGGATTTGGAATTTGGTCAGTGCTGCATTGTTACTCAGTGTTGCCATAACCTGAGCGCTTGTTCAACAGAAGCTCCAAGAACAAGGGAGTCTGAGCCAGGAAAAAATGTCCTCTCTTGGTTGTTCAGCCATCCTGCAGCTCTGGCTTCCCAGTACGGGGACATCCTGGAGCCTGTTGCTGCGTGTGTGCCGGAGAGGTGCCAACCTCTTCAGAAGGTCACTGTGTGTACAGAAGCTCTCAGAGTACATAGGAAGTGACCAGTAGGTATTTAAGTCCAGTTAGTGGGTGACGACGGGAGAGTGCACATCAGTGGCACTGCATTTCGTGTCCTTTACTGCTCTTCCCTTCTGGTACTAGAGAACCTGACTTAAGCAGGGCTTTCATGTGCTCTTAAATTGATAATTAGTGAAGCATCTTTGGTCCCTCCTATAGAGATGTCATGGCATCCAGAATTAATGCACAGTGTGATTGATAAAGGTAGGTAAGAGATCACTTCCATGGTCTTAGGCAACACTAAATCTGTTTTCTGCAG
Seq C2 exon
ATCAGCAACCGGGTCCTGTATGTGCTTTTCACACACGTGCAAGAGCTCTTTGGCACCGTGGTCCTGAAGCAAGTAACGAGACCTCTGCGTTGGTCCAACATGGCCACAATGCCTACACTGCCAGAGACCCAAGCAGGCATCAAGGAAGAAATCAGGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013461:ENSRNOT00000035606:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.088 A=NA C2=0.111
Domain overlap (PFAM):
C1:
PF097264=Macoilin=FE(20.6=100),PF0062022=RhoGAP=FE(78.9=100)
A:
NA
C2:
PF097264=Macoilin=FE(9.4=100),PF0062022=RhoGAP=PD(2.7=7.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAAGAGGCTTGTGGGAGGA
R:
TCTTCCTTGATGCCTGCTTGG
Band lengths:
343-2056
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]