MmuINT0131224 @ mm10
Intron Retention
Gene
ENSMUSG00000024096 | Ralbp1
Description
ralA binding protein 1 [Source:MGI Symbol;Acc:MGI:108466]
Coordinates
chr17:65858973-65861605:-
Coord C1 exon
chr17:65861256-65861605
Coord A exon
chr17:65859135-65861255
Coord C2 exon
chr17:65858973-65859134
Length
2121 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGG
5' ss Score
10.88
3' ss Seq
TCTGAATCTGTTGTCTGCAGATC
3' ss Score
8.68
Exon sequences
Seq C1 exon
GAATCAAATCAAAGGTAGATGAGCTAAAAGCAGCCTATGACCGAGAGGAGTCTCCAAACTTAGAAGAATATGAGCCTAACACTGTAGCCAGCTTGCTGAAGCAGTATTTGCGAGACCTTCCAGAGAATTTGCTTACCAAAGAGCTTATGCCCCGGTTTGAAGAGGCTTGTGGGAAGACCACAGAGATGGAGAAAGTGCAGGAATTCCAGCGCTTGCTCCGGGAACTGCCGGAGTGCAATCATCTTCTGCTTTCCTGGCTCATTGTGCACCTGGACCACGTCATTGCGAAGGAGCTGGAAACGAAGATGAACATCCAGAACATCTCTATAGTGCTGAGCCCCACCGTGCAG
Seq A exon
GTACGGTCCTGTCCACACACACACTTTTGGTACTGGCACTGGGAAACTGGGGAACTCGTCTGTTGCTGAGTCTCATGGAAAACAGTGAATCTAAGGGGAATAACGGATCTGCCTGGTCACAGATCTTCTCTGTCCAGGTGCAGGCAGTGCCAGCGTGTAGGGGAGCGAGCGTATTTGTCCTTTTGCTTAGTTGTGAAATGCGAATATCCTGTCAGCTTGGATCAAGCCAAAGGGCTGTAATGTTCGTATGGCAGTTCTTTCTGAGGACTTCACCTGTGAGATGGATATAGAGAGAGATGCTACATTGCCTCTTTGTTTGGTTGGTTTGGTTTGGTTTTGGTTTTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAGTCCTCCTGCCTCTGCTTCCCGAGTGCTGGGACTAAAGGCATGTGCCACCACGTCCAGCTGCTACTTTGCCTCTTAATCGGAGAAGTCATTGAGGGAATTGAGTAGTATATTGCTTGTATTGTTTTTGTTTTGTTTTAAACACTTGCATATCTGGCATCCTATTGTATATGTATGTTGAAGTTCATATGTAGGAATTTCATGTGTGTTGCCCATACATGTAGATGTATGCATGTTTATGTGGTGGTCATAGGACAACTTTGTTATTGTTGCTTAGGCACCAACCATCCACCTTTTTTCTCTTCTTATACAGGGTCCCTCACTGGCCAGCAGGCTTCAGGGACCCTCCCCAGGCTGGGATTATAGGTGTGCACAACCATGCCCAACTTTTTTTTTTTTTTTAATGAGAATTAAGAAGCTTGACCTCAGCTCTCTTGTGCCTGCGTGCTTTATTGGCTAAGCTATCTTCCTACAGAGCCTTTACCACTACTCAGTTGATGCTGCCAAAGAAAGACTTTGCATTTAGAAGAGCTGACATTTTACTGTGTCAGAAACGGGGGGTGGGGGTGGGGGGTGGAGAGATGGCTCAGCAGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGAAACCACATGGTGACTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGTTATAGTGTATTCATATAAATAAATAAATCTTAAAAAGAGAGAGAGAGAGAGAATGAAGAAAAAAGAGAGGGGAAAAAAGGAGACACTGGTTCTTTTTTGTTTGTTTGTTTGTTTTTGTTTGTTTTGTTTTGTTTTGTTTTTTTTAGAGAGACAGGGTTTCTCTGTAGCCCTGGCTGTCCTGGAACTCACACTGTAGACCAGGCTGGTCTTGAACTCACTCAGAGATCCCCCTGCTTCTGCCTCCCGAGTGCAGGGACTGATGGTGTGCCCACTCTAATTTTTAATTGAAGCCCTCTTTTTGGTTGGCATGTGAGGTCCTGACCATATGTCATTGTAATTATTATAATTATATATATTTATAATTAATTATTATAAGAGGATGGTGCTTTCTTTTGCTAAAGATACTTAGTTGTTGGTTATGTTTTAAAAACAAACTGTTTCTTACATGTCTCGAATATCATGATCACCTTTGTTAGCCTGGATTTGGAATTAGTCAGTGCTGCATTGTTACTCAGTATTGCCCTAACGTGGGTGCTTGAACTACAGAAGCTCCAAGAGTAAGAGAAAGTCTGAGCCAGGCAAAAGCCGTCCTGCCCTTCTGGCTTCCTAGGATGGGAACATCTGGGAACAGTGGAGCTTGTGTGCTGGAGAGCTCTATACACCTGAAGGTGCGCCACCGCCCAGCTGTCTGCAGGAGCATCACTCTGTGTGGACGGGTCTCCGAACATGTAGGAAATGACCGTTGACGGATGACTAGAAAGTGCACATTGATGGCGGTGTGTCTTGTGCCCTTTCCCGGCTTGCCAGCTATACTGCCTGAGAACCTGACTCAAGCCGGGCTTTCACCTAAACTGATCATTAGTGAAGCCTGTTCTGTCCCCCGTGGAGACCTGCATAGTATCCAGAGTTAAAGGCTGCATAGTGTGACTGGCGAAGGTAAAGATCACTTTCATGGTCTTACGCACCTCTGAATCTGTTGTCTGCAG
Seq C2 exon
ATCAGCAATCGGGTCCTGTACGTGCTTTTCACACATGTGCAAGAGCTCTTTGGCACCGTGGTCCTGAAGCAAGTAACAAGACCTCTGCGCTGGTCCAACATGGCCACGATGCCCACACTGCCAGAGACCCAAGCAGGCATCAAGGAGGAGATCAGGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024096:ENSMUST00000024905:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.060 A=NA C2=0.111
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(78.9=100)
A:
NA
C2:
PF0062022=RhoGAP=PD(2.7=7.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types