GgaINT0094427 @ galGal3
Intron Retention
Gene
ENSGALG00000008405 | Q5ZLT6_CHICK
Description
NA
Coordinates
chr2:101176473-101181235:-
Coord C1 exon
chr2:101180886-101181235
Coord A exon
chr2:101176635-101180885
Coord C2 exon
chr2:101176473-101176634
Length
4251 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
CCCCATGCCCTTCCTTTCAGATC
3' ss Score
11.32
Exon sequences
Seq C1 exon
GAATAAAGTCAAAAGTTGATGAGCTCAAGGCAGCCTATGATCGAGAAGAATCTCCCAACCTGGAAGAATACGAGCCCAACACAGTAGCCAGCTTGCTGAAACAGTACCTACGAGAACTGCCTGAAAACTTGCTTACCAAAGAGCTAATGCCCCGCTTTGAAGATGCTTGTGGAAAGAGCACCGAAGCCGAGAAAGTCCAGGAGTGCCAGAGGCTGCTGAAAGAGCTGCCGGAGTGTAACCATCTCCTCATTTCTTGGCTCATTGTGCATATGGACCACGTTATCGCAAAAGAACTGGAAACAAAAATGAACATCCAGAATATTTCTATAGTGCTGAGCCCTACTGTCCAG
Seq A exon
GTACGTGCCCCACACAAGTGCTAGAGCAGAGTGTCAGCACGAGGAAGGCTTCTTTATAGGAATTCTCTTGCGGGTGTGAGTCAGGCACTGCTTGATACAGTTAAGCTGAATTAAAGCTCTTCTTTGTACTTTGGGAACATAAAATGCACCGAAAGTAGGGTGGGGAAGGCTGTCTGAAGATGAGCTTGCATAGCACGGGTCTGGTATCTGCTATTATGAAAACAGTGCAAAGACTGCTGACAGGGCTTTTTTATTCTGTGAGCACAAGTAATTCAACATTGGATTAGTCTGGTAATTCAAGTAGATGTAGAATTTCTGTGTTTGTGACACAGTGGTGACTTAGTGAAGGCTGTTTTGTTGCTTGATTTTACTATCAAGCCACCGAACCCTGTGCTGCAAACAGATCTTCCTGGTGCAGTGATGACTTGGGTATAACGGCTGTGGTGTCTGCAGTCAGATTGCTGACTAGGAAGATTTTGGTGCTTTCTGGACTGGTTAATTCTTTAATAAACAACTTTCTATTAAACGCAGCTCAGAATCAGTCCTGTCCATACTGGAAACGTGGCAGTGGGTGTGGGTGGTTTAGAAGAAAGCCCACCTGTCAGAAAAGCACTGCTTTATTTAGAGTCCAGATGGAGGCCCAGTGTGACAAGGGCTGTTCTCTGCTCTTCTGCTGTGCCAGTTGTTTTCTAACAAAAGCAACAATTAATGTAAAATGACGCAGGCCCAATCATGCTTCATTGTTGAGTAGATTTTAGCAATTAAAATACAGGCAGAGACAGAATTCTAATCCTTCTTTCTGGATGCATTTATAAATTTTAATGGAAGATACAGCACCAGAATAAATATTTGCTTCTGCCTCATTTTAAAGCAAGGAATCCGGTAGCAACTCCTTTCAAGCAATTTTTTTTAACTGTTTTAAATCTGAGAGAGAAGTTGGTGAAAGTACTGAAGTTTTGGGAGGAGCGAGAAGGCAGCCATCCATAGCACAGTATGTTTGCTGTTCCTGCTTACCTGCTGCTATCACTTCTACCTTTGCGTGAGCAAAAAGAAAGAGGTGGTCAGAGGGCTGGGACATCTCCCCTCCGAGGACAGGCTGAGAGAGCTGGGCTCTTCAGCTAGGAGAAGAGAAAGCTCTGGGGGGGACCTTATAGCGGCCTTCCAGTACCTGAAGAGGGCCTACAGGAAAGCTGGGGAGGGACTTTTTATAAGGACATGTGGCGACAGGATGAGGTGAAATGTCTTTAAACTGGAAGAGGGTACATTTAGACTAGATATTAAGAAGAAATTCTTTACTGTGAGGGTGGTGAGACACTGGAACAGGTTGCACAGCGAGGTTGTGGATGCCCCCTCCCTGGAAGCATTGAAGGCCGGGCTGGATGGGGCTTTGAGCAACCTGGTCTAGAGGGAGGTGTCCCTGCCTATAGCAGGGGGTTGGAACTAGGTGATCTTAGAGGTCCCTTCCAACCCAAACCATTCTATGTATTTGCGAGTGATGGAAGGCTGTTGCATTTCTGGAGAAAGATATTGTGCTTCACAGAAACAGATCATGTGAAGAAATCATCTCAACCAGTGTTCTCATCCCCCATGCCCTTCCTTTCAGATCAGCAACCGTGTCCTGTATGTATTTTTTACGCATGTTCAAGAGTTCTTTGGGAATGTGACCCTAAAACAGGTCACAAAACCTCTTCGTTGGTCAAATATGGCGACCATGCCAGCACTTCCAGAGACACAGGAAAGCATCAAAGAAGAAATCAGACGACAGGTTGGTAAATACTTCAGTTGTTCTGTTTAGTGTTGTCCTGGATTTGATAAGTCCAGCAGTACACTTTCATAAGAGTGTAATTGTGTCACAGTTGTCCTGTTGCGGGACGCCCCATGCTTTGAAAAGCAGAACTCCACACCTATGGTCATAAAGCCAATGCCATATTTTTTCCCCTGCTCTGACATACAAAGGACACTAACTGCCTTGGTAATGTTTCTAGGAGTTTCTACTGAACTGTTTACACCGAGACTTGCAAGCAGGGATAAAAGACTTATCCAAAGAAGAGAGACTCTGGGAGGTGCAAAGAATTTTAACAGCTCTTAAGAGGAAGCTAAGAGAAGCCAAGAGACAAGTGAGTAGCTTGCTATTTATTGCCCAAACGTAGATCACAGACGAAAATGAACAGAAGTATTTCTAACTGCAGCAATTCTTGCCCACGTTTCGTGACTGTCGGTTATTTGCTGCTCGTCCCCGTTTCTTGGGGTGCATCATTCAGCCTTACTGCCTGACCCAGTAGTTGGAAGCACCATAAATGTGAGGTGATTCTATAACCGTGGACTGGGGAATTCTAATGCTCACAGATAGTGACAGGTATGGAATTTTGGTGCTCTGGGGGTTATAAGTTGGATTTAGAAAGCGTGGTTGCCACCAAAGCCTTTCATTATGCTTTCCTGCTCTGCACTGGACCTTTCTCTCTGCTCTGTGAATTTTAGCATGCAAATTGTAAAGAGAAACATCAAGTTACATTCTAGAATTAAATTTGCAGATTTCTGATATTACCTACAGTACTCTTGAGGTGTGAAAGTGTAAGAATATCACTAATTTTTTAGGGAAAACTGGGCCATTAATGAGTGAGTTGATAGAGCTGTGACAGTTGTAAAAGCATTCNNNNNNNNNNGGTGTGTGTGTAGCATGGCTTAACAATGCCTTTGAATCCATGGGAAAAAGAATCATTTGAGCCTTTACTGGAGCATAAGTTTAGTCTTTTACACTTGTATCCTCTCTGGTATGTTGTAGGTGGAGCAGATATCCCAATACTTACTATTCAGATGACTCAAAACAAAACGTCACAAACTGTGAGAATGCAGGACAGTTAGACCAAACCCCTTTCAATCTTTTCAATGCAGTTTTTTATTTTCCATCTTAATTCCTAAATGGCTGAGGAGTGGCACCTTCACCCTCCAGCTGCTTTCAAAACAGTGCATGACTAAAACAACGTTTGACAGAGCTCGTGTCCACTCCGTGCTTAACAGTGTGTTCTGGCCCAATGAAAGGGAGGACTGAAGGTTCAGGTGGATGAACTTAAGCAGCATTTTTAAGCTGCCCTGTGTCCCAGAGCACTGGGTAAGCAGTGAACGCAGGCATTTTGTTTTGCAAATGCTGAAATTACAAGCATTTTCCTGAAAACTTTTCAAAATAAGAGTTGATGGTTCTAAATTTGAAAAGAAGTCTTCGTAGCAGTGACTGATGAGTGGGGGAGGTGGCCTTTTCAAAACCGTCCTCTTTTCTCTGGCAGGAGTGTGAAACAAAGATCGCACAAGAAATCGCCAGCCTTTCCAAGGAGGATGTCTCCAAAGAAGAAATGAATGAGAACGAAGAAGTTATAAATATTCTACTTGCTCAGGTAGATGGCAAGCACGTGTCAGTTTGTATGCTGCATACTCGTGTTCTGCATCTGTCAGTTACTAAGCATGTATTTATTCCTTTCTATACAGTGGAAAACGTAAGGGGCATAAATGGGCCTCTTGCTNNNNNNNNNNATCCGGTAGCAACTCCTTTCAACAATTTTTTTTAACCGTTTTAAATCTGAGAGAGAAGTTGGTGAAAGTACTGAAGTTTTGGGAGGAGCGAGAAGGCAGCCATCCATAGCACAGTATGTTTGCTGTTCCTGCTTACCTGCTGCTATCACTTCTACCTTTGCGTGAGCAAAAAGAAAGAGGTGGTCAGAGAGCTTGGAGCATCTCCCCTCCGAGGACAGACTGAGAGAGCTGGGCTCTTCAGCTTGGAGAAGAGAAGGCTCTGGGGGGGACCTTATAGCAGCCTTCCAGTACCTGAAGAGGGCCTACAGGAAAGCTGGGGAGGGACTTTTTATAAGGACATGTGGCGACAGGATGAGGTGAAGTGTCTTTAAACTAGAAGAGGGTAGATTTAGATTAGATACTAGGAAGAAATTCTTTACTGTGAGGGTGGTGAGACACCAGAACAGGTTGCACAGTGAGGTTGTGGATGCCCCCTCCCTGGAAGCATTGAAGGCCAGGCTGGATGGGGCTTTGAGCAACCTGGTCTAGAGGGAGGTGTCCCTGCCTATAGCAGGGGGTTGGAACTGGGTGATCTGAGAGGTCCCTTCCAACCCAAACCATTCTATGTATTTGCGAGTGATGGAAGGCTGTTGCATTTCTGGAGAAAGATATTGTGCTTCACAGAAACAGATCATGTGAAGAAATCATCTTAACCAGTGTTCTCATCCCCCATGCCCTTCCTTTCAG
Seq C2 exon
ATCAGCAACCGTGTCCTGTATGTATTTTTTACGCATGTTCAAGAGTTCTTTGGGAATGTGACCCTAAAACAGGTCACAAAACCTCTTCGTTGGTCAAATATGGCGACCATGCCAGCACTTCCAGAGACACAGGAAAGCATCAAAGAAGAAATCAGACGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008405:ENSGALT00000029123:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=NA C2=0.110
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(79.5=100)
A:
NA
C2:
PF131751=AAA_15=PU(24.7=65.5)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]