GgaINT0094427 @ galGal4
Intron Retention
Gene
ENSGALG00000008405 | RALBP1
Description
ralA-binding protein 1 [Source:RefSeq peptide;Acc:NP_001026746]
Coordinates
chr2:98412455-98414569:-
Coord C1 exon
chr2:98414220-98414569
Coord A exon
chr2:98412617-98414219
Coord C2 exon
chr2:98412455-98412616
Length
1603 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
CCCCATGCCCTTCCTTTCAGATC
3' ss Score
11.32
Exon sequences
Seq C1 exon
GAATAAAGTCAAAAGTTGATGAGCTCAAGGCAGCCTATGATCGAGAAGAATCTCCCAACCTGGAAGAATACGAGCCCAACACAGTAGCCAGCTTGCTGAAACAGTACCTACGAGAACTGCCTGAAAACTTGCTTACCAAAGAGCTAATGCCCCGCTTTGAAGATGCTTGTGGAAAGAGCACCGAAGCCGAGAAAGTCCAGGAGTGCCAGAGGCTGCTGAAAGAGCTGCCGGAGTGTAACCATCTCCTCATTTCTTGGCTCATTGTGCATATGGACCACGTTATCGCAAAAGAACTGGAAACAAAAATGAACATCCAGAATATTTCTATAGTGCTGAGCCCTACTGTCCAG
Seq A exon
GTACGTGCCCCACACAAGTGCTAGAGCAGAGTGTCAGCACGAGGAAGGCTTCTTTATAGGAATTCTCTTGCGGGTGTGAGTCAGGCACTGCTTGATACAGTTAAGCTGAATTAAAGCTCTTCTTTGTACTTTGGGAACATAAAATGCACCGAAAGTAGGGTGGGGAAGGCTGTCTGAAGATGAGCTTGCATAGCACGGGTCTGGTATCTGCTATTATGAAAACAGTGCAAAGACTGCTGACAGGGCTTTTTTATTCTGTGAGCACAAGTAATTCAACATTGGATTAGTCTGGTAATTCAAGTAGATGTAGAATTTCTGTGTTTGTGACACAGTGGTGACTTAGTGAAGGCTGTTTTGTTGCTTGATTTTACTATCAAGCCACCGAACCCTGTGCTGCAAACAGATCTTCCTGGTGCAGTGATGACTTGGGTATAACGGCTGTGGTGTCTGCAGTCAGATTGCTGACTAGGAAGATTTTGGTGCTTTCTGGACTGGTTAATTCTTTAATAAACAACTTTCTATTAAACGCAGCTCAGAATCAGTCCTGTCCATACTGGAAACGTGGCAGTGGGTGTGGGTGGTTTAGAAGAAAGCCCACCTGTCAGAAAAGCACTGCTTTATTTAGAGTCCAGATGGAGGCCCAGTGCGACAAGGGCTGTTCTCTGCTCTTCTGCTGTGCCAGTTGTTTTCTAACAAAAGCAACAATTAATGTAAAATGACGCAGGCCCAATCATGCTTCATTGTTGAGTAGATTTTAGCAATTAAAATACAGGCAGAGACAGAATTCTAATCCTTCTTTCTGGATGCATTTATAAATTTTAATGGAAGATACAGCACCAGAATAAATATTTGCTTCTGCCTCATTTTAAAGCAAGGAATCCGGTAGCAACTCCTTTCAAGCAATTTTTTTTAACTGTTTTAAATCTGAGAGAGAAGTTGGTGAAAGTACTGAAGTTTTGGGAGGAGCGAGAAGGCAGCCATCCATAGCACAGTATGTTTGCTGTTCCTGCTTACCTGCTGCTATCACTTCTACCTTTGCGTGAGCAAAAAGAAAGAGGTGGTCAGAGGGCTGGGACATCTCCCCTCCGAGGACAGGCTGAGAGAGCTGGGCTCTTCAGCTAGGAGAAGAGAAAGCTCTGGGGGGGACCTTATAGCGGCCTTCCAGTACCTGAAGAGGGCCTACAGGAAAGCTGGGGAGGGACTTTTTATAAGGACATGTGGCGACAGGATGAGGTGAAATGTCTTTAAACTGGAAGAGGGTACATTTAGACTAGATATTAAGAAGAAATTCTTTACTGTGAGGGTGGTGAGACACTGGAACAGGTTGCACAGCGAGGTTGTGGATGCCCCCTCCCTGGAAGCATTGAAGGCCGGGCTGGATGGGGCTTTGAGCAACCTGGTCTAGAGGGAGGTGTCCCTGCCTATAGCAGGGGGTTGGAACTAGGTGATCTTAGAGGTCCCTTCCAACCCAAACCATTCTATGTATTTGCGAGTGATGGAAGGCTGTTGCATTTCTGGAGAAAGATATTGTGCTTCACAGAAACAGATCATGTGAAGAAATCATCTCAACCAGTGTTCTCATCCCCCATGCCCTTCCTTTCAG
Seq C2 exon
ATCAGCAACCGTGTCCTGTATGTATTTTTTACGCATGTTCAAGAGTTCTTTGGGAATGTGACCCTAAAACAGGTCACAAAACCTCTTCGTTGGTCAAATATGGCGACCATGCCAGCACTTCCAGAGACACAGGAAAGCATCAAAGAAGAAATCAGACGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008405:ENSGALT00000036901:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=NA C2=0.111
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(79.5=100)
A:
NA
C2:
PF0062022=RhoGAP=PD(2.1=5.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAATGCCCCGCTTTGAAGA
R:
TCCTGTGTCTCTGGAAGTGCT
Band lengths:
342-1945
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]