DreINT0124129 @ danRer10
Intron Retention
Gene
ENSDARG00000078653 | ralbp1
Description
ralA binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2098]
Coordinates
chr2:53229420-53233589:-
Coord C1 exon
chr2:53233240-53233589
Coord A exon
chr2:53229582-53233239
Coord C2 exon
chr2:53229420-53229581
Length
3658 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTGTCTCTTCCGGTCTGTAGATC
3' ss Score
9.17
Exon sequences
Seq C1 exon
GTATGAAGTCTAAGGTGGATGAGCTGAAAGCGGCGTATGACCGTGAGGAGTGTCCATGTCTGGAGGAGTATGATCCGCACACAGTGGCCAGCTTGTTGAAACAGTATCTGCGAGAGTTACCTGATAATCTGCTGGGGAAGGAGCTGTCTCTGCGTTTCGAGGAGGCCTGCGGGAGACCCAGCGAGGCCGAGAAGCTGCAGGAGTTCCAGCGGCTCCTGACGGAGGTGCCGGCGGGCAGCAGACTCCTCCTGGCCTGGCTGATCACACACATGGACCACGTCATCGCCCGCGAGGCCGACACAAAGATGAACATTCAGAACATCTCTATTGTGCTCAATCCCACCATACAG
Seq A exon
GTGAGCCCGTCCTCTTGGACCTCTGGTTTTGGGTTGAGGTCTTCTACAGTATTTTCAGTTGAATATGTTTTTATAAGGAAACAAATTAATTAATTTATTTAAAGTAAAGGATTTTTGTATTTAAGTTTGTAAACAATTATTATCAATATAACAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAACAGAATAGAATAGAATATGACGGTACAACAGAATAGAATAGAATAGAATATGACAGAATAGAATAGAATAGAATAGAATAGAATAGAACAGAGCAAAAATAAAAAGAATAGGAAAGAATAGAATCAAATAGAATAGGACAGGATAGAATAGGACAGAATAGAATAGAATAGAATAGAATAGAATAGAAGGGGACAGGACAGTACAACACAGAACAGGATAGAAGAGATTAGAATAGGATAGGACAGGACAGAGTAGAATATAATAGGACAGATATTAATAGAATAGGACAGGACAGAATCAAACAGAATAGTACAGAGTAGAATATAATAGAAGAGGACAAGACAAAATAGAACAGAATAGAGAAGGAAAGGACAAAATTGAACAGGATAGAATAGATTAGAATAGTACGGAACAGGACAGAAAAGAATAGGATAGAATAGAATAGAACAGAATAGAAGAGGACGAGACAAAACAGAACAGGATAGAACAGAATGGAATATGACAGGACAGAATAGAATATGACAGAACTGGGTAATATAATAAAATATAATAGGACAGAAAGGAATATAATAGGACAGGACAGAGTAGAATAGAATAGATCAGAAAATAATATGACAGAATAGAATATAATGGATTAGGACATAATTGAACAAAAAATAATAGGACAGGATGGAATAGAATTGAACGGAATTTAATAAAATGGAATAGGTAGACTGAATATGACAGGAAAGAGTAGAATAGTATAGATTTATAATAGGACAGAACAGGAAAGAATAGAATAGAATAGAATAGAACAGAATATAATAGAATAGAAAAGAATAGGGTAGAATAGAATATGACAGGATAGAATAGAAATGAATAGGGTAGAAAAGAATATGACAGGGTAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAATAGAATATGACAGGGTAGAATAGAATAGAATATAATAGGGTAGAATAGAATATGACAAGGTAGAATAGAATAGAATAGAATAGGGTAGAATAGAATATGATAGGGTAGAATAGAATAGAATAGAATAGAATAGAATAGGGTAGAATAGAATATGATAGGGTAAAATAGAATAGAATGCTTTATAAATTAGGCAAATGAACAAAACAAAATAGACAAAAAAAAGTACTTGATATGAAGAAATGTGCAATTATTTTAGACACGGAATATATGAAATAGAAATAAAAGAGAATGTAAAATAGATATAATTTAAAAAATGTTTTTTAGATAAATTTACAATTTAAAAAAATTATAAAATATTTTATTGAAAAATAGTATTTATAATTAACTGAAATATATAAAAAATGGCATTGAATATTTATATCAAAATATTGTTTAAGTTAATAGAAGGGGAATTTTTAGATAAAATCAGATTAATTTTATACATTTTTATCAATAAATTCTTAATTTTATAGCTTTTTTTGTGTGTGTTTTCCAAAAGTTAGCAAGACTAGTTTTTATCTAGTTGTTATCACTTTTAATAAAAAAAAGGAAACATGTTTCTGTTTCTTGCTTCACACACTAAAATGTTCTTCTTTACACCATGCTGTGTAATTATTGGAATTTCATTTAAAATGTATTTTAAAAAATGTAAAAAAAAAAAAAAATAATAATAATAAAAGATGGTGTGTTTAATAAAATTCAAGTCTAATTATATTACATTAAGTTTGTATTTTAAATTAATTTTAAATACATTTTTTAAGCATTTTTAGCAAGGTTTTTTATTTTAAAAAAGCAAAACAAACGTTTGTTGCACACATTTCACATCTCACATTAAAACAAATTACTATTAGCTGAGCAAATATATATAGTTTACGCACAGTTTTATATAAATTTAACATCATCATTTTTCACTTTCACATTATTTTCTCCCTCCATATTAAATATTTTGTAAATATGCAACACGCTTCATCAGGGTGTGGTGAAAATGAAGTGTAGTACACTGTAAGGTGAAGTATGGCGTAGTGAAATGTTAATGGCGTAGCAGGATGTGTTTCTGCTTAGACTGAAGGTTGTCCTACTTTACAGTCTCTCAGGACACATGGAGGATGGAGGCGCCCTCATACTGATGATAATGAGTGCTTTGTTTGGGGTCAGTTTTTTTGGAGCGAGTTGGACTGCAAATAATGTGGAGAAAAGGGCTGCATGATACTTGAAAAATATGCAATATTGTTGTTGAGCATTGCGATAATATTTATTGTGATATAAACATTTCTCTAGACAAATGCTTTTTTATCAGCAATGTTTTAAAATAATTTTATTTATTTAATGATATTAAAATACACTGGTAAAATCTCTGTTTTTAGTTCTAATTCAGACTAAAAATCTGTGTCAAGGTGCAAACATTTAGTCTCTAAAACACTATGAATGAGTGAAAACCTCAACAGATATTCTCTGATTGGTTGTTGTCATTTTCCTCTCTCATCTCAACTCTGCCCATAAGGGTTTATTTTCAGCTCTGGGTTAACCTTTGGGTCGCTCCAGCCAATAGCAGAACATCAGCTACTGGGGAGGCGGGGATAAAGATAGTAATGCCCCCATCTGATTGGTCAAATTTAGATAAACAAGTAATACATAAAATAAACATCATATAGGGCGGAACTTTAGGTTAACCTTTGGGTCGCTCCAGCCAATAGCAGAACATCAGCTACTGGGGAGGCGGGGATAAAGATAGTAATGCCCCCATCTGATTGGTCAAATTTAGATAAACAAGTAATACATAAAATAAACATCATATAGGGCGGAACTTTAGGTTAACCTTCGGGTCGCTTTAGCCAATAGCAGAACATCAGCTACTGGGGAGGCGGGGATTAATATAGTAATACCCCCATCTGATTAGTCAAATTTAGATAAACAACTAATATATAAAATAAACATTGTTTAGGGTGAGACTTTAGGCTCACCTTTGGGTCGCTCCAGCCAATAGCAGAACATCAGCTACTTGGGAGGCGGGGATTAAGATATTAATGCCCTTATTTGATTGGTCAAATTTAGATAAACAACTAATACATAAAATAAACATCATGTAGGGCGGACTTTAGGTTAACCTTTGGGTCGCTCCAGCCAATAACAAAACATCAGCTACTGGGGAGGTGGGGATAAAGATAGTAATGCCCCCATCTGATTGGTCAAATTTAGATAAACAATCAACACATAAAATAAAATATCATTTATCACATGGTACGATACATATATTGCATATACTTTTATCGCGATAACAAAACTTTTGTGATATATTGTGTAGCCCTAGTGGAGAACTTAAGTGGGCATGATTGGACAATAACACCATTCATTTATCTCAATTAAACAATGGTTCTGTGCTTTTTAAGGTTCAACATGGCTGAATATTCCTTTATGACTCGAAATCATCCCTTTACTCTCTGTCTCTTCCGGTCTGTAG
Seq C2 exon
ATCAGTAATCGTGTGCTGTACGTGTTTTTCACTCACGTCCGGGAGATGTTTGGTGATGTGTTTCTGAAGCCGGTCGTTCATCCTCTTCGCTGGTCCAATATGGCCACCATGCCCACCCTGCCGGATACTCAGGAGAGCATTAAAGAGGAGATCCGCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078653:ENSDART00000114682:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.148
Domain overlap (PFAM):
C1:
PF0062022=RhoGAP=FE(79.5=100)
A:
NA
C2:
PF0062022=RhoGAP=PD(2.1=5.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]