HsaINT0136882 @ hg19
Intron Retention
Gene
ENSG00000017797 | RALBP1
Description
ralA binding protein 1 [Source:HGNC Symbol;Acc:9841]
Coordinates
chr18:9522158-9524753:+
Coord C1 exon
chr18:9522158-9522507
Coord A exon
chr18:9522508-9524591
Coord C2 exon
chr18:9524592-9524753
Length
2084 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAT
5' ss Score
7.79
3' ss Seq
TGTAAATCTTTTTTTCTTAGATC
3' ss Score
8.22
Exon sequences
Seq C1 exon
GAATTAAATCAAAGGTGGATGAGCTAAAAGCAGCCTATGACCGGGAGGAGTCTACAAACTTGGAAGACTATGAGCCTAACACTGTAGCCAGTTTGCTGAAGCAGTATTTGCGAGACCTTCCAGAGAATTTGCTTACCAAAGAGCTTATGCCCAGATTTGAAGAGGCTTGTGGGAGGACCACGGAGACTGAGAAAGTGCAGGAATTCCAGCGTTTACTCAAAGAACTGCCAGAATGTAACTATCTTCTGATTTCTTGGCTCATTGTGCACATGGACCATGTCATTGCAAAGGAACTGGAAACAAAAATGAATATACAGAACATTTCTATAGTGCTCAGCCCAACTGTGCAG
Seq A exon
GTACATGGTCTTCTCTACACATATACCCTCTGGTACTGACATTGGGGAACTGGGGTAATTTTCTATTGCTGAGTCACATGTAAAGCAGTGAACTTGAGGAGATAGGTAATGGATTAGCTTGAATACGGGTCTTTTCCTTTCATAATTTGGACAGTGTCAATGTATAAGATAACATACTTGCCCTTTAGCTTGTAGTGATGTAATTTGAATGCGGTACAGTCTTTGATGTGGGTTTATAAACAAGACCTGATGACAAGGATCCTTCATTAGGGGAGGAGGAGCCCATGGCATCTACAGTTATAGAGTTCGTGTGTAGAATTTTAGAGATCCCAGTTATTTAATCAATAGCATTATTGCTTCGTTAGATCACAGACACACATCAAACTCAGGCACAAAGGGACCTGTCATTAATTGTTTGGTCAAAGATTTAGCCTGAGGATTTCATTCATAAGGATGGATCCTAGAGAGACATGTTATAGGCTCTGAATCTGAAAAGGAACTTCAGGGAATTGGGTAGTGTGTTAATTGGTATCTTTTTACGACATACATACTTGGCTTTCCTTTATTGCTGCTCAGTTGGTGCTGTCATAGAGTATATGTTTTCTTTTAATTGCAGTTAATGATATTTTACTCAGGCCAATAAAAAGGGAGATGATAGGTTATATTTATTATCTTAAGCCCTCTTTTTGGCCAGTATTCTGAGTCACCATAAATCACTGTCACTGTTATTAGAGAGTGTTTTCATTTACTAAAGAGCGTTTCAGTCAGGCGCGGTGGCTCACACCTTTAATGCGAGCACTTTAGGAGGCTGTGGCAGGAGGATAGCGAGAGGCCAGGAGTTCAGCCTAGGCAACATAGCAAGACCCTGTCTCTACATAAAAATTAAAAATTAGCTGGGTGTGGTAGCATGTATGTGTAGTCCCAGTTACTTCGGAGGCTGAGGTAGGAGGATTGCTTGAGCCCAGCAGTGAGCTATGATCATGCCACTGTACTCCTCTCTGGGTGACAGAGCAAGATTTTATCTCTAAAAAATAAAGATTCTTCTGTTACTCATTGATTACGCTTTGAAAGCAAAATGTTTCTCAGATTTTAGTTTGATCATTAGGATTTCAGGATCTGGTAAATATTACATTGATACTTAATATTACTATAATATAATAGAGATGGTTGTATCATAGAAGAGTCAAGTGTGTTGTAAGAGTAAGTTTTAGGTAGGAAATAATTTCTTGTAGTAGCTTTTCAGCCAACCTAATGCCCTGGCCTCCTAGCATATGAACATCCATACTTAAATGCTGGCTGTGTCCAGGTATTTGTTTCTGGAGTGAGGGCTTTCAACCTCAACCCAGCTTTACTACTGTGGTGCTCCCACTTCCCTCATGGTCCTCATTCATTCCATTGCGTCTGTTAAAATATGTCAAAGTAAGTTGAAAATAAAGAATATAAGATGTTTTAGCCGGGCATGGTGGCTCACGCCTGTAATCGCAGCACTTTGGGAGGCTGAGGTGGGTAGATCATTTGAGGTCAGCAGTTCGAGCCCAGCCTGGCCAACATGGTGAAACTCCGTCTCTACTGAAAATACAAAAAAATCAGCCAGGTATGGTGGCACACGCCTGTAATCCCAGCTTACCGGGGAGGCTGAGGCAGGAAAATCGCTTGAACCCGTGAGGTGGAGGTTGCAGTGAGCTGAGATTGTGCCACTGCACTCTAGCCTGGGCTACAGAGCGAGGCTCCATCTCAAAAAAGCACCACCACCGCCACCAACAACAAAAAACACACAAAAAATAAGATGTTTAAATCAGTTAATACTGTGATAGAAAAAATAAACAAATGGATGGCATCAACTTCTCTATCCTTTTCTTGACTTTTTTTCCCTTCAGATCTTTCTGGTGCTTGAATACATGATTTAACTCATATTTTACCATTTTCTTCTTAAATTGGCTATTAACTAGCAAAGACTGTGTTGTCATTACTGGGTAGAATTTTCTTTATGTGTCCAGGATTAAAGGATATATTATGTAATAGACACAAATAAGTGAAATAGAATGATAGTTTTAATGGTTTTCTTGTAAATCTTTTTTTCTTAG
Seq C2 exon
ATCAGCAATCGAGTCCTGTATGTGTTTTTCACACATGTGCAAGAACTCTTTGGAAATGTGGTACTAAAGCAAGTGATGAAACCTCTGCGATGGTCTAACATGGCCACGATGCCCACGCTGCCAGAGACCCAGGCGGGCATCAAGGAGGAGATCAGGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000017797-RALBP1:NM_006788:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.074
Domain overlap (PFAM):
C1:
PF097264=Macoilin=FE(20.5=100),PF0062022=RhoGAP=FE(79.5=100)
A:
NA
C2:
PF097264=Macoilin=FE(9.3=100),PF0062022=RhoGAP=PD(2.1=5.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)