MmuINT0103541 @ mm9
Intron Retention
Gene
ENSMUSG00000040752 | Myh6
Description
myosin, heavy polypeptide 6, cardiac muscle, alpha [Source:MGI Symbol;Acc:MGI:97255]
Coordinates
chr14:55572126-55572790:-
Coord C1 exon
chr14:55572535-55572790
Coord A exon
chr14:55572369-55572534
Coord C2 exon
chr14:55572126-55572368
Length
166 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
3' ss Seq
CTTCCATTCCTTGCCCCCAGGAA
3' ss Score
12.12
Exon sequences
Seq C1 exon
GGATGCCCTGCTGGTTATCCAGTGGAACATTCGGGCCTTCATGGGGGTCAAGAATTGGCCATGGATGAAGCTCTACTTCAAGATCAAACCGCTGCTGAAGAGCGCAGAGACGGAGAAGGAGATGGCCAACATGAAGGAGGAGTTTGGGCGAGTCAAAGATGCACTGGAGAAGTCTGAGGCTCGCCGCAAGGAGCTGGAGGAGAAGATGGTGTCCCTGCTGCAGGAGAAGAATGACCTACAGCTCCAAGTGCAGGCG
Seq A exon
GTGAGGCCACATGACTTTCTCTTCTTTCTCCCTCTCTGTCTCCTGGATTGTTGCCCATCTCATCTCCAGAGTCTGGGAATCCAGAAGCTCCACCCCTTTACAAGACCCGCATCTTCCCCCTCTTTAATCTCTTTAATCGTTGACTTCTTCCATTCCTTGCCCCCAG
Seq C2 exon
GAACAAGACAACCTCAATGATGCAGAGGAGCGCTGTGACCAGCTGATCAAGAACAAGATCCAGCTGGAGGCCAAGGTGAAGGAGATGACCGAGAGGCTGGAGGACGAGGAGGAGATGAACGCCGAGCTCACTGCCAAGAAGCGCAAGCTGGAAGATGAGTGCTCAGAGCTCAAGAAGGATATTGATGACCTGGAGCTGACGCTGGCCAAGGTGGAAAAGGAAAAGCATGCAACAGAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040752-Myh6:NM_001164171:21
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.058 A=NA C2=0.481
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PU(28.0=61.6)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(42.3=100),PF0157614=Myosin_tail_1=PU(8.3=11.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGACGGAGAAGGAGATGGC
R:
AGCCTCTCGGTCATCTCCTTC
Band lengths:
249-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: