HsaINT0107811 @ hg38
Intron Retention
Gene
ENSG00000197616 | MYH6
Description
myosin heavy chain 6 [Source:HGNC Symbol;Acc:HGNC:7576]
Coordinates
chr14:23393666-23394323:-
Coord C1 exon
chr14:23394068-23394323
Coord A exon
chr14:23393909-23394067
Coord C2 exon
chr14:23393666-23393908
Length
159 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGG
5' ss Score
7.93
3' ss Seq
TCCCTGTTCTCTTCTCCCAGGAA
3' ss Score
11.27
Exon sequences
Seq C1 exon
GGATGCCCTGCTGGTAATCCAGTGGAACATTCGGGCCTTCATGGGGGTCAAGAATTGGCCCTGGATGAAGCTCTACTTCAAGATCAAGCCGCTGCTGAAGAGCGCAGAGACGGAGAAGGAGATGGCCACCATGAAGGAAGAGTTCGGGCGCATCAAAGAGACGCTGGAGAAGTCCGAGGCTCGCCGCAAGGAGCTGGAGGAGAAGATGGTGTCCCTGCTGCAGGAGAAGAATGACCTGCAGCTCCAAGTGCAGGCG
Seq A exon
GTGAGGCCACGTGATTATCTCTTCAGCCCTCTCCTCCCCTCCCCTAGATTATAGCCCATCTCACAACCAGGGACTGGGAGTCTAGGAGTGCCAGCTCTTTTTAAGACCCTAGGTCTCCTCTCTTTAACCATCAGCTTCCTCCCTGTTCTCTTCTCCCAG
Seq C2 exon
GAACAAGACAACCTCAATGATGCTGAGGAGCGCTGCGACCAGCTGATCAAAAACAAGATTCAGCTGGAGGCCAAAGTAAAGGAGATGAATGAGAGGCTGGAGGATGAGGAGGAGATGAACGCGGAGCTCACTGCCAAGAAGCGCAAGCTGGAAGACGAGTGCTCAGAGCTCAAGAAGGACATTGATGACCTGGAGCTGACACTGGCCAAGGTGGAGAAGGAGAAGCATGCAACAGAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197616:ENST00000356287:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=NA C2=0.481
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PU(27.0=61.6)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(40.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGACCTGCAGCTCCAAGTG
R:
GCATGCTTCTCCTTCTCCACC
Band lengths:
257-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development