BtaINT0097336 @ bosTau6
Intron Retention
Gene
ENSBTAG00000040053 | MYH7
Description
myosin-7 [Source:RefSeq peptide;Acc:NP_777152]
Coordinates
chr10:21363035-21363679:+
Coord C1 exon
chr10:21363035-21363290
Coord A exon
chr10:21363291-21363436
Coord C2 exon
chr10:21363437-21363679
Length
146 bp
Sequences
Splice sites
5' ss Seq
GCGGTAAGA
5' ss Score
9.63
3' ss Seq
TCTCTGTCCTCTTCTCTCAGGAA
3' ss Score
11.23
Exon sequences
Seq C1 exon
GGATGCCCTGCTGGTAATCCAGTGGAATATTCGGGCCTTCATGGGGGTCAAGAACTGGCCCTGGATGAAGCTCTATTTCAAGATCAAACCACTGCTGAAGAGCGCAGAGACTGAGAAGGAGATGGCCAACATGAAGGAGGAGTTTGGGCGCATCAAAGAGACACTGGAGAAATCGGAGGCTCGGCGCAAGGAGCTGGAGGAGAAGATGGTGTCCCTGCTGCAGGAGAAGAACGACCTGCAGCTCCAAGTGCAGGCG
Seq A exon
GTAAGACCATCTCTCTTTCCCCCTCCCCTGGATCCTAACCCATCTCATCATCAGGGACTATGAGTCTCCAAGCTTCAGCTCTCTTTAAGGCTCTGGATCTCTCCTCTGTTTCATCACCAGCTCTCCTCTCTGTCCTCTTCTCTCAG
Seq C2 exon
GAACAAGACAACCTGAATGATGCGGAAGAGCGCTGTGACCAGCTGATCAAGAACAAGATCCAGCTGGAGGCAAAGGTGAAGGAGATGACTGAGAGGTTGGAGGACGAGGAGGAGATGAACGCTGAGCTCACTGCCAAGAAGCGCAAGCTGGAAGATGAATGCTCTGAGCTCAAGAAGGACATTGATGACCTGGAGCTGACACTGGCCAAGGTGGAGAAGGAGAAGCATGCAACAGAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000040053:ENSBTAT00000007359:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.058 A=NA C2=0.481
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PU(27.7=61.6)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(41.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAGCGCAGAGACTGAGA
R:
TCTCCTTCACCTTTGCCTCCA
Band lengths:
246-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development