GgaINT0132876 @ galGal3
Intron Retention
Gene
ENSGALG00000013781 | Q90WH5_CHICK
Description
NA
Coordinates
chr19:13078-13528:+
Coord C1 exon
chr19:13078-13206
Coord A exon
chr19:13207-13285
Coord C2 exon
chr19:13286-13528
Length
79 bp
Sequences
Splice sites
5' ss Seq
GCTGTGCGT
5' ss Score
3.77
3' ss Seq
CCAATTTGTCCCCTTCATAGGAA
3' ss Score
8.35
Exon sequences
Seq C1 exon
ACAATGAAGGAGGAATTTGGGCATCTGAAGGAAGCCTTGGAGAAGTCAGAGGCACGTCGGAAGGAGCTGGAGGAGAAGATGGTTTCCATGCTGCAGGAGAAGAATGACCTCCAGTTGCAAGTGCAGGCT
Seq A exon
GTGCGTGATGGAGATATACCAACCCCACAGACTCCCTTCTCCCTTCCTTCCTGTTCCCACCAATTTGTCCCCTTCATAG
Seq C2 exon
GAACAAGACAATCTTGCTGATGCTGAGGAGCGCTGTGATCAGCTGATCAAGAACAAGATCCAGCTGGAGGCCAAAGTGAAGGAGATGACAGAGAGGCTAGAGGAAGAAGAGGAGATGAACGCTGAGCTGGCAGCCAAGAAGAGGAAGCTGGAGGACGAATGTTCAGAGCTTAAGAAGGACATTGATGACCTGGAGCTGTCTTTGGCCAAAGTGGAGAAGGAGAAACATGCCACAGAGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013781:ENSGALT00000040718:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.186 A=NA C2=0.481
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0157614=Myosin_tail_1=PU(26.4=42.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTTTCCATGCTGCAGGAG
R:
AGCTCAGCGTTCATCTCCTCT
Band lengths:
179-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]