MmuINT0103571 @ mm9
Intron Retention
Gene
ENSMUSG00000053093 | Myh7
Description
myosin, heavy polypeptide 7, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:2155600]
Coordinates
chr14:55607612-55607999:-
Coord C1 exon
chr14:55607881-55607999
Coord A exon
chr14:55607762-55607880
Coord C2 exon
chr14:55607612-55607761
Length
119 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
ATTTCTCCCCTACCCTGCAGGTG
3' ss Score
11.54
Exon sequences
Seq C1 exon
AGGCTGACAAATCAGCCTACCTCATGGGGCTGAACTCAGCCGACCTGCTTAAGGGGCTGTGCCATCCTAGAGTCAAAGTGGGCAACGAGTACGTCACCAAGGGGCAGAATGTCCAGCAG
Seq A exon
GTGGGTTGTCTTTGGATGATAAGTGAATGGCCGAGAGATCACTGCATAGTGGAATATGAGCTTTCAAACTCCTCCTTCCCAGGAGCGCATATCATCCAGATTTCTCCCCTACCCTGCAG
Seq C2 exon
GTGTCATACGCCATCGGGGCACTGGCCAAGTCAGTGTACGAGAAGATGTTCAACTGGATGGTGACACGCATCAATGCAACCCTGGAGACCAAGCAGCCGCGCCAGTACTTCATAGGTGTCCTGGACATTGCCGGCTTTGAGATCTTCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053093-Myh7:NM_080728:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACCTCATGGGGCTGAACT
R:
CGAAGATCTCAAAGCCGGCAA
Band lengths:
252-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: