RnoINT0096527 @ rn6
Intron Retention
Gene
ENSRNOG00000016983 | Myh7
Description
myosin heavy chain 7 [Source:RGD Symbol;Acc:62030]
Coordinates
chr15:33652218-33652600:-
Coord C1 exon
chr15:33652482-33652600
Coord A exon
chr15:33652368-33652481
Coord C2 exon
chr15:33652218-33652367
Length
114 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TCTGCCTTTCTCCCCTGTAGGTG
3' ss Score
13.16
Exon sequences
Seq C1 exon
AAGCTGACAAGTCAGCCTACCTCATGGGACTGAACTCGGCTGACCTGCTCAAGGGGTTGTGCCACCCTCGAGTCAAAGTGGGCAACGAGTATGTCACCAAAGGGCAGAATGTCCAGCAG
Seq A exon
GTGGGTTGTCTTTGGAAGATGAATGAATGGTGGAGAGACCACACCATGGTAGAATATGAGCTTCCAAATTCATCCTTCCCAAGAGCACGCCTCATCTGCCTTTCTCCCCTGTAG
Seq C2 exon
GTGGCATATGCCATCGGGGCACTGGCCAAGTCAGTGTACGAGAAGATGTTCAACTGGATGGTGACACGCATCAACGCAACCCTGGAGACCAAGCAGCCACGCCAGTACTTCATAGGTGTCCTGGACATCGCCGGCTTTGAGATCTTTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016983:ENSRNOT00000024186:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGCCTACCTCATGGGACT
R:
AAGATCTCAAAGCCGGCGATG
Band lengths:
255-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]