MmuINT0103582 @ mm10
Intron Retention
Gene
ENSMUSG00000053093 | Myh7
Description
myosin, heavy polypeptide 7, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:2155600]
Coordinates
chr14:54983242-54983785:-
Coord C1 exon
chr14:54983543-54983785
Coord A exon
chr14:54983419-54983542
Coord C2 exon
chr14:54983242-54983418
Length
124 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GTGGGATTTGTGTTTGGCAGGTG
3' ss Score
6.46
Exon sequences
Seq C1 exon
GAACAAGACAACTTGGCGGATGCAGAGGAGCGCTGTGACCAGCTGATCAAGAACAAGATCCAGCTGGAGGCCAAGGTGAAGGAGATGACCGAGAGGCTGGAGGACGAGGAGGAGATGAATGCCGAGCTCACTGCCAAGAAGCGCAAGCTGGAAGATGAGTGCTCAGAGCTCAAGCGGGATATCGATGACCTGGAGCTGACGCTGGCCAAGGTGGAGAAGGAAAAGCATGCAACAGAGAACAAG
Seq A exon
GTGAGGCTGGTTCCCTCGGGTTCCAAACCACAGCATGTTCCTCATGGGAGCATGGAGGTTCCTCTAGGTGTCCCCAGGATGGTGTCCTTTGACTTAAAGGGAATGTGGGATTTGTGTTTGGCAG
Seq C2 exon
GTGAAAAACCTGACAGAGGAGATGGCTGGTTTGGATGAGATCATTGTCAAGCTGACAAAGGAGAAGAAAGCTCTGCAAGAGGCCCACCAGCAGGCTCTGGATGACCTGCAGGCTGAGGAAGACAAGGTCAATACTCTGACCAAGGCCAAGGTCAAGCTGGAGCAGCAGGTGGATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053093:ENSMUST00000102803:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=NA C2=0.356
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(41.0=100),PF0157614=Myosin_tail_1=PU(26.4=42.0)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(29.7=100),PF0157614=Myosin_tail_1=FE(45.0=100),PF0003816=Filament=PU(6.4=30.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGCTGGAAGATGAGTGCT
R:
ACCTTGGCCTTGGTCAGAGTA
Band lengths:
253-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types