MmuINT0103599 @ mm10
Intron Retention
Gene
ENSMUSG00000053093 | Myh7
Description
myosin, heavy polypeptide 7, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:2155600]
Coordinates
chr14:54991838-54992383:-
Coord C1 exon
chr14:54992240-54992383
Coord A exon
chr14:54991995-54992239
Coord C2 exon
chr14:54991838-54991994
Length
245 bp
Sequences
Splice sites
5' ss Seq
TATGTGAGT
5' ss Score
5.56
3' ss Seq
TTGCTCTTCCTTACCCTCAGACC
3' ss Score
10.14
Exon sequences
Seq C1 exon
ACGGTGACTGTGAAGGAGGACCAGGTGATGCAGCAGAACCCACCCAAGTTCGACAAGATCGAGGACATGGCCATGCTGACCTTCCTGCATGAGCCGGCTGTGCTGTACAACCTCAAGGAGCGCTACGCTTCCTGGATGATCTAT
Seq A exon
GTGAGTGCAGCACCGGTCCATCACCCAGAACCCAGAGCTTCCTGGGCAAGAGCAGTCTCCTGAAGCCAAGCCACCTACCTGCCTGCTCTGTGTCCAAGGAGTATGGCACTCTACACCAGCCCCTGCTCCTTTGGCTCCGTTATAAAACCAGACTGATTCTGCGCTTCGCCCTTTGTTCCCATTGTCTCCTGGGGTCTTTCTCTAATTCTGACAACCACCCCTCACTTGCTCTTCCTTACCCTCAG
Seq C2 exon
ACCTACTCGGGCCTCTTCTGCGTCACCGTCAACCCCTACAAGTGGCTGCCTGTGTACAATGCGGAAGTGGTGGCTGCCTACCGGGGCAAGAAGAGGAGCGAGGCCCCTCCTCACATCTTCTCCATCTCTGACAACGCCTATCAGTACATGCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053093:ENSMUST00000102803:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.229 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0273614=Myosin_N=PD(16.7=14.6),PF0006316=Myosin_head=PU(4.1=58.3)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTGTGAAGGAGGACCAGG
R:
CAGCATGTACTGATAGGCGTTGT
Band lengths:
293-538
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types