RnoINT0096532 @ rn6
Intron Retention
Gene
ENSRNOG00000016983 | Myh7
Description
myosin heavy chain 7 [Source:RGD Symbol;Acc:62030]
Coordinates
chr15:33655107-33655606:-
Coord C1 exon
chr15:33655463-33655606
Coord A exon
chr15:33655264-33655462
Coord C2 exon
chr15:33655107-33655263
Length
199 bp
Sequences
Splice sites
5' ss Seq
TACGTGAGT
5' ss Score
7.77
3' ss Seq
CTCTTCCTTAACGCCCCCAGACC
3' ss Score
7.15
Exon sequences
Seq C1 exon
ACGGTGACTGTGAAGGAGGACCAGGTGATGCAGCAGAACCCTCCCAAGTTCGACAAGATCGAGGACATGGCCATGCTGACCTTCCTGCACGAGCCGGCTGTGCTCTACAATCTCAAGGAGCGCTACGCTTCCTGGATGATCTAC
Seq A exon
GTGAGTACAGCAGTCCATCCACTGGAACCTAGAGCTTCCTGGGCAGTAGCAGTCTCCTGAAGCCAAGACCCCTACCAGGAAGCAGGGCATCTACACCAGCTCCTGTCCCTTTGACTCTGAGTTTTGCTTCCTTCGTCTCCTGGGGTCTTTCTCGAATTCTGACAACCACCCCTTACTGCCTCTTCCTTAACGCCCCCAG
Seq C2 exon
ACCTACTCAGGCCTCTTCTGTGTCACCGTCAACCCCTATAAGTGGCTGCCAGTGTACAATGCGGAAGTGGTAGCTGCCTACCGGGGCAAGAAGAGGAGCGAGGCTCCACCCCACATCTTCTCCATCTCTGACAACGCCTATCAGTACATGCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016983:ENSRNOT00000024186:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.229 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0273614=Myosin_N=PD(16.7=14.6),PF0006316=Myosin_head=PU(4.1=58.3)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTCCCAAGTTCGACAAGA
R:
AGGCGTTGTCAGAGATGGAGA
Band lengths:
246-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]