MmuINT0103664 @ mm9
Intron Retention
Gene
ENSMUSG00000055775 | Myh8
Description
myosin, heavy polypeptide 8, skeletal muscle, perinatal [Source:MGI Symbol;Acc:MGI:1339712]
Coordinates
chr11:67111847-67112899:+
Coord C1 exon
chr11:67111847-67112236
Coord A exon
chr11:67112237-67112772
Coord C2 exon
chr11:67112773-67112899
Length
536 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
CCTTGCCATGTGATCCTTAGGGA
3' ss Score
7.8
Exon sequences
Seq C1 exon
GCCCGCATCGAGGAGCTGGAGGAGGAAATCGAGGCAGAGCGGGCCTCCAGGGCCAAAGCAGAGAAGCAGCGCTCTGACCTCTCCCGGGAACTGGAGGAGATCAGCGAGAGGCTGGAAGAAGCCGGCGGGGCCACCTCTGCTCAGGTGGAGATGAACAAGAAGCGGGAAACTGAGTTTCAGAAACTTCGCCGGGACCTGGAGGAGGCCACGCTGCAGCACGAAGCCACAGCAGCCGCTCTTCGGAAGAAGCACGCGGACAGTGTGGCTGAGCTCGGGGAGCAGATCGACAACCTGCAGCGGGTGAAGCAGAAGCTGGAGAAGGAGAAGAGCGAGCTGAAGATGGAGATCGATGACCTTAGCAGTAATGCAGAGGCCATCGCCAAAGCCAAG
Seq A exon
GTAACAAACACTGTCTTTATATAGGGTACTGAGCCAGAAAAACAGTATCCATTGTTCCTGGTATCACACCTGGTTTACAGGCATTTTATAGCATTATTCAAATATTTCCTGTCCTAATATATTCCCATAATTTTATTTTTTAAATTTCTTAAAATTCTAAAGTAACCCACTAGTATGACTTCAAAATTCACTTAAGTGAGTGTCGACATCATTGGGATATGTGGCTTTTTTTCCAATAATGAATATGACATGTATGTTAAATTCTGGCATATGCCAAACACCAACTTTCTGCTTAATATCTCACATATTGTAAAAATATATCTTAGTCTTTTAATATTAAAACATCTTAGTTATTTTTAAAAATTGGGGTTAAAATTTTCTCTTTCTTGTCTTGTCTTTTCTTTTCTTCTCTTTTCTCCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCCTTCCTGCCTATATTCATACTCAGTGTTTGATTCTCCCTTGCCATGTGATCCTTAG
Seq C2 exon
GGAAATCTGGAGAAGATGTGCCGCACTCTGGAGGACCAGGTGAGTGAACTGAAGAGCAAGGAGGAGGAGCAGCAGCGGCTCATCAACGAGCTGACAGCGCAGAGAGCACGCCTGCAGACAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055775-Myh8:NM_177369:27
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.900 A=NA C2=0.814
Domain overlap (PFAM):
C1:
PF0003816=Filament=FE(45.3=100),PF0157614=Myosin_tail_1=FE(15.0=100)
A:
NA
C2:
PF0003816=Filament=FE(14.7=100),PF0157614=Myosin_tail_1=FE(4.9=100),PF0003816=Filament=PU(25.8=55.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGAGGAGATCAGCGAGAG
R:
AGTTCACTCACCTGGTCCTCC
Band lengths:
351-887
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: