GgaINT0128202 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GIG1]
Coordinates
chr18:358531-359681:-
Coord C1 exon
chr18:359292-359681
Coord A exon
chr18:358658-359291
Coord C2 exon
chr18:358531-358657
Length
634 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
TTTGTTCTTCATGCAAATAGGCA
3' ss Score
6.01
Exon sequences
Seq C1 exon
GCCCGTATTGAGGAACTGGAGGAGGAAATCGAGGCAGAGCGAACCTCTCGGGCAAAAGCAGAGAAGCACCGAGCTGACCTCTCCAGGGAGCTGGAGGAGATCAGTGAGCGCCTGGAGGAAGCAGGAGGGGCTACAGCAGCTCAGATTGATATGAACAAGAAGCGTGAGGCAGAATTTCAGAAGATGCGCCGTGACCTCGAAGAGGCCACGCTGCAGCACGAAGCCACGGCTGCTGCCCTGCGGAAGAAGCATGCGGACAGCACAGCGGAGCTTGGGGAGCAGATTGACAACCTGCAACGAGTCAAGCAGAAGCTGGAGAAGGAGAAGAGTGAGCTGAAGATGGAGATTGATGACTTGGCCAGCAACATGGAGTCTGTCTCCAAAGCCAAG
Seq A exon
GTACTGAAATACATGTTTAGATTAATTCAAACTTATAAGCAAGTATTCATATTTTATAGTGCATGATAATCAATCATATTTTACAATAAGTAGTTGTCTTTTACAAGTTGAATTTGTGTTTATGCATTTCCAGATTAGTGTAATAATGCACTGCATCTTTTTGCTGAAAGCTGAAAATGTTTAGCTGATGCGCCTAATATAAGGATCTATGGAGAACTCATTGCTTGATTCAGTGCTTGATATTTTAATGAAAGACACTGACATTAGCAGGCTTTCAGTTTTTTCTAAATTAGAAATTGCTTCAGTCATACATTTCTTTTTTCCCTATTATTTTATTCCTCCTCCCTTAAATGCATCAATTACATAATAACTAAATGTGAAGCAGAAGTTTAAAATAATGGCACAGTGTGCCATCATCCTTTTTATGAATTTCAAAAACTGATTGTATGTTAATTAATTGTATAAGTATTGGAATAAAGGATGCAGAAATATAGAAAGGTATATCAGTTACATGACATATATTGACTTAGCATACTCTAAATCATTAGCTTCATTTTTTTTGCTATTCATGAGACTTCAGATGTAATTATGTTAAATCACCAATCATCCTTCATTTTGTTCTTCATGCAAATAG
Seq C2 exon
GCAAATTTAGAGAAGATGTGTCGTTCCCTGGAAGATCAACTCAGTGAAATTAAGACAAAGGAAGAGGAGCAACAGCGCACCATTAATGACATCAGTGCACAGAAAGCTCGTCTACAAACAGAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027323:ENSGALT00000044266:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.954 A=NA C2=0.814
Domain overlap (PFAM):
C1:
PF087025=Fib_alpha=PD(14.8=13.1),PF0157614=Myosin_tail_1=FE(15.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGAGCTGGAGGAGATCAG
R:
TCTTCCAGGGAACGACACATCT
Band lengths:
342-976
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]