GgaINT0128202 @ galGal3
Intron Retention
Description
NA
Coordinates
chr18:361223-362373:-
Coord C1 exon
chr18:361984-362373
Coord A exon
chr18:361350-361983
Coord C2 exon
chr18:361223-361349
Length
634 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
TTTGTTCTTCATGCAAATAGGCA
3' ss Score
6.01
Exon sequences
Seq C1 exon
GCCCGTATTGAGGAACTGGAGGAGGAAATCGAGGCAGAGCGAACCTCTCGGGCAAAAGCAGAGAAGCACCGAGCTGACCTCTCCAGGGAGCTGGAGGAGATCAGTGAGCGCCTGGAGGAAGCAGGAGGGGCTACAGCAGCTCAGATTGATATGAACAAGAAGCGTGAGGCAGAATTTCAGAAGATGCGCCGTGACCTCGAAGAGGCCACGCTGCAGCACGAAGCCACGGCTGCTGCCCTGCGGAAGAAGCATGCGGACAGCACAGCGGAGCTTGGGGAGCAGATTGACAACCTGCAACGAGTCAAGCAGAAGCTGGAGAAGGAGAAGAGTGAGCTGAAGATGGAGATTGATGACTTGGCCAGCAACATGGAGTCTGTCTCCAAAGCCAAG
Seq A exon
GTACTGAAATACATGTTTAGATTAATTCAAACTTATAAGCAAGTATTCATATTTTATAGTGCATGATAATCAATCATATTTTACAATAAGTAGTTGTCTTTTACAAGTTGAATTTGTGTTTATGCATTTCCAGATTAGTGTAATAATGCACTGCATCTTTTTGCTGAAAGCTGAAAATGTTTAGCTGATGCGCCTAATATAAGGATCTATGGAGAACTCATTGCTTGATTCAGTGCTTGATATTTTAATGAAAGACACTGACATTAGCAGGCTTTCAGTTTTTTCTAAATTAGAAATTGCTTCAGTCATACATTTCTTTTTTCCCTATTATTTTATTCCTCCTCCCTTAAATGCATCAATTACATAATAACTAAATGTGAAGCAGAAGTTTAAAATAATGGCACAGTGTGCCATCATCCTTTTTATGAATTTCAAAAACTGATTGTATGTTAATTAATTGTATAAGTATTGGAATAAAGGATGCAGAAATATAGAAAGGTATATCAGTTACATGACATATATTGACTTAGCATACTCTAAATCATTAGCTTCATTTTTTTTGCTATTCATGAGACTTCAGATGTAATTATGTTAAATCACCAATCATCCTTCATTTTGTTCTTCATGCAAATAG
Seq C2 exon
GCAAATTTAGAGAAGATGTGTCGTTCCCTGGAAGATCAACTCAGTGAAATTAAGACAAAGGAAGAGGAGCAACAGCGCACCATTAATGACATCAGTGCACAGAAAGCTCGTCTACAAACAGAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023884:ENSGALT00000040060:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.954 A=NA C2=0.814
Domain overlap (PFAM):
C1:
PF087025=Fib_alpha=PD(13.4=11.5),PF0157614=Myosin_tail_1=FE(15.0=100),PF045827=Reo_sigmaC=PU(32.4=35.4)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.9=100),PF045827=Reo_sigmaC=FE(29.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGAGCTGGAGGAGATCAG
R:
TCTTCCAGGGAACGACACATCT
Band lengths:
342-976
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]