RnoINT0096605 @ rn6
Intron Retention
Gene
ENSRNOG00000050042 | Myh8
Description
myosin heavy chain 8 [Source:RGD Symbol;Acc:620356]
Coordinates
chr10:53838746-53839738:+
Coord C1 exon
chr10:53838746-53839135
Coord A exon
chr10:53839136-53839611
Coord C2 exon
chr10:53839612-53839738
Length
476 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCT
5' ss Score
8.49
3' ss Seq
CCTTACCGTGTGATCCTTAGGGA
3' ss Score
8.51
Exon sequences
Seq C1 exon
GCCCGCATCGAGGAGCTGGAGGAGGAAATCGAGGCAGAGCGGGCCTCCAGGGCCAAAGCAGAGAAGCAGCGCTCTGACCTCTCCCGGGAACTGGAGGAGATCAGCGAGAGGCTGGAAGAAGCCGGCGGGGCCACATCTGCTCAGGTGGAGTTGAATAAGAAGCGGGAAACGGAGTTCCAGAAGCTTCGCAGGGACCTGGAGGAGGCCACCCTGCAGCATGAAGCCACATCAGCCGCTCTTCGGAAGAAGCACGCGGACAGTATGGCGGAGCTCGGGGAGCAGATCGACAACCTGCAGCGGGTGAAGCAGAAGCTGGAGAAGGAGAAGAGCGAGCTGAAGATGGAGATCGACGACCTTAGCAGTAATGCAGAGGCCATCGCCAAAGCCAAG
Seq A exon
GTACCTAACACTGCCTCTAGAGAAGGCATTGATCCAGAAAAACAGCACCCATTATTCTTGGTATCAAATGTGGTTTGCAGGCCTTTCATGGCAGTATTCAAGTATGTCCTGCCCTACTGTATTCCCATAATTTCATTTCCTAAATTTTCTAAAGTTCCAAAGTAACCCACTAGTATAACTTCAAAATCCACTTAAGTGAGTGTCGACATTATTGGGATCTGTGGCTTTTCCCCAATAATGAATATAACATGTATGTTAAATTCTGGCATATGCCAAACGACAGTGATATAACTATCTACTCGTATCTCATATATTTAAAAAATATATCTTTTTCTTTTAATATTAAAACATCTTAATTACTTTAAAAATGGGATTAAATTTTATTTGTTCTCTCCTTTCATCTTTCTTTCTTTTTCTTCCTTTCTTGCCTATATTCATAGTCAGTGTCTGATTATCCCTTACCGTGTGATCCTTAG
Seq C2 exon
GGAAACCTTGAGAAGATGTGCCGCACTCTGGAGGACCAGGTGAGCGAGCTGAAGAGCAAGGAGGAGGAGCAGCAGCGGCTCATCAATGAGCTGACTGCACAGAGAGCACGCCTGCAGACAGAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050042:ENSRNOT00000057260:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.892 A=NA C2=0.837
Domain overlap (PFAM):
C1:
PF087025=Fib_alpha=PD(14.9=13.1),PF0157614=Myosin_tail_1=FE(33.5=100),PF079267=TPR_MLP1_2=PD(97.6=95.4)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGAAGCAGCGCTCTGAC
R:
GCGGCACATCTTCTCAAGGTT
Band lengths:
356-832
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]