MmuINT0104347 @ mm9
Intron Retention
Gene
ENSMUSG00000025716 | Myo3a
Description
myosin IIIA [Source:MGI Symbol;Acc:MGI:2183924]
Coordinates
chr2:22455602-22456670:+
Coord C1 exon
chr2:22455602-22455708
Coord A exon
chr2:22455709-22456629
Coord C2 exon
chr2:22456630-22456670
Length
921 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
AATTCTTCTACTCCCTTTAGAAG
3' ss Score
6.59
Exon sequences
Seq C1 exon
GTGTCTCTAAAGGGGAAGAACCAAAAATACTGAGACCTCCAAGACGACCTCGGAAACCCAAAACATTAAATAACCCTGAAGACTCCACATACTACTATCTACTCCAT
Seq A exon
GTAAGTGGCTCATTCTTACAAGTAAACTGAAGACCGGCATTGGGCTGCCTCAAAAGAAGGCCTTGCATCATGAAGACCCTCCTTGGATTCTACTTCACAGATACCCCACTCAATACCCCCTTTGTTTTTTTCTAGTCCTCTTCCTCATGGTCCTGCCCTCTCTTGTAATCCTGGACCTACACTGTGTTCTCCCAAAAACTTTTTTCTGGTAGTTACTTTTCTTAGTTTCATTGTTGTGAAGAAACTGCAATTCTTATAAATTCTTATAAATTTATAAATTATAAATTTATAATTTATAAATTCTTATAAAGAAAAACATTTAATTGGGGTTGGCTTACAGTTTCAGAGTTTTAGTCCATTATCATCATGGTAGGAAGTATGTCAGTATGGTGCTGGAGAAGGAGCTGAGAGTTCTACATCTTGATCTGCAGGCAACAGAAAAGAGAATGTGATGACACTGGGAATAGCTTGAGCATAGAAGATCACAAAGCCCGCTCCCATGGTAACATACTTCCTCCAATAAGGCTACATCTCCTAACAGTGCCACTCCCTTTGGACCAAGCATTCAAACACATGAGTCTATGGGAGCTATTCCTATTCAAACTCACTTATCTGAGTTTATATACAAATATCAGCCTAAAAAGGGAAGTCCATTGTGGGAAAACCCTCCAGACAGAGACCTTCATTTAAATGAGTATGGTGTCATAAAAGCAGTAAAAGAGAAGTGAATGTTGGTTGGGCTTCTGCAAACTCCAGGCCAATAGTGAGATGTATTCATAACCATTGTGATAGCTGATCCTAGAACCAGTTCTTAATGTTATGTTCACATCTCCCTCACCTACCATAAGGATAATAAATATTATACAATATGATTTCATATTACTATATATTATATCTTTTCAATTCTTCTACTCCCTTTAG
Seq C2 exon
AAGTCAACCCAAGAAGAAAAACGGAGACCAGGAAAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025716-Myo3a:NM_148413:31
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: