HsaINT0108706 @ hg38
Intron Retention
Gene
ENSG00000095777 | MYO3A
Description
myosin IIIA [Source:HGNC Symbol;Acc:HGNC:7601]
Coordinates
chr10:26193205-26201305:+
Coord C1 exon
chr10:26193205-26193311
Coord A exon
chr10:26193312-26201264
Coord C2 exon
chr10:26201265-26201305
Length
7953 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
TGAATTCTTCTTTCCTTTAGAAG
3' ss Score
7.86
Exon sequences
Seq C1 exon
GTGTCTGTAAAGGAGAGGAGCCAAAAATATTGAGACCCCCAAGACGACCCCGGAAACCCAAAACATTAAATAACCCTGAAGACTCCACATACTATTATCTACTTCAT
Seq A exon
GTAAGTGGCTCACTCTTACTATCAGATGGGAGCCATCACATCTACTAATGGCCAGTGTGAAAACTGTGGCTAGATTAGTTCAGGCACAAAGGAAGGCCTGGCAGGACAGAGATGCGCTTGGTCTCCTCTTCACTGCCCTCCCCTGGCTGGGGATCTGGGCACTTTGATCTCCTCCAGCCCTTCTTCCTCACATTCAAGCCTCTCCCATGGTAGTACCTACCATGTCCTCCTTGCAGCTTTCTCTGCTGGTCCATTAATATGAGCTGATATGAAAATATCAACTCAGAAAGAGAAACCCATCATAGCAGGAGCTCTCCAGAGAGGGGCCCTGGTGTAAATGGGTGGGTTATGGTGAAACTAGAAGAAAAGGAAAGAAGAGGGGAAACAGACGTTTATTAAGCATCTTTTAAATTCCAGGCCTAGAATAAGGCTTGTTCACATCCACTGTGATAGCTAATCCTGGAAATATCCCTGAATGTATTATCCATATCTCTCAGATCAGGATTCTGAGACACAGATAAGCATGCCTTAGCTGCCAGGCCATTCATTTTATTGAGGTCTTCTGACCCCTCAGCTCCTGCTCACTAACAGCATGAGGACTCATTGGCGTTGCCCCTGATCGCCTGGCCTTCTTCTCATGTTCCTGTTCTCTATAAATGCCACTGTCATCCACATGGTCTCATAAACCAAGAACCTGGGAGTCATTCTGGTTTTTGTCCTCTCTCTCATACCTGTGATCCATCAGTGGCTCTAACTGTGGCTTCTACCTGCAAAAGCTCACTCCAACTCATTTCCCCCCTCTAATCTCACAGCAATTACCATATTTCAGACTATTAATCATTTCCCACTGTGGAATATTTCAGGTCCCACGTAACTGCCTAATCGCATCCTCTCCAGCCTGCACCTGAAAATGTCTCTAAACCATACCTTTGAGCATGCTCCTCCCTTAATTGTTCTTTTAATGGCTCAGCAACTCCTTCAGGATGAAGTCCTGATTCCTTCCAAGGCCTTCTTCGTGGGACCCGTGACTGCTTTTCAGCCTCTTTTCTTGCCCTCTTCTTGTCCTCGAGCCATAGTGAACTGCTTGAAACTCTGCTGGTGAGCTGCATTCCCTCATGCTCCCGAGGCCTTTGCACCCTCTGGCTGGTCCCTCCATTTGCAATATTTATTCAGTCTTCCACTCCCCACTGCCACAGTGACACAGCAGCACTCCCCTATGCCCTGGAGAACCCAGAGGATGTGTTGAAACCCAGAGAATCAGTTAGAAATAAGTTTCCCACCTCGCAGGCAGAAAATGAAGCTCACACTTGACCTCCAAGTTAGCCAGTCTTCTCTAGTTCATTCCCTTCTGTCTAGTGATTTCTTTTCAGTTTCCAAAGAGGGTTGTCTGTGGAAACCCATTCTCCTCCCCTCTCATTTCCTTTAGACAATCCCATTAGCTACTACAACCTCAGTGACTGCTGATTTCTGAATCTTGATCGCTGGCTTAGATCTCTCTGTAGCTCCAGACTCAAATATCAAACTACCTCATGTTTGTTTTACATATTCTACATAGATACACATGGGCATCCATGTATACATGTATAGAGATATATACACACACATACACATCCATACATGGGCGCACACACTCACAGCTTTGTTGAGATATAAATCGCATGCCATACAATTAACCCACCTTAATATACGTTAAATGGTTTTTAGTACAATAATCACAATCAATTTTACAACATTTTCATCACCTTAAAAAGAAACTCATTAGAAGTCATTACCCACTCCCCACCCCCTGCCCCAAGCTCTAGGCGATCACCAATCTAGTTTTCTGTTTCTGTAGATTTGCCTATTCTGGACATTTCCTATAAATAGAATCACACAATATATGGTCTTTTGTGAATAGTCAACTAATTTTACAAACCAGTAATCTGACTATTACCTTGACTTCTCCCTCGTTCTCATCTTCCATATTCAAAAATCTAAATCCAAATATCTCTTGAGTTTCTGTTTCTCTCCATGCTCTGTGCTAATACCCTCTTCCAGGCCAGCATGTCTTGTCAGTAGTTCTGAGTCACTCCTCTTACTGGTCCCTTGGTCTTGTTTTTCCCCTTCCAATTAACGTATTTTCCACACTGTAGCCTGAGTTGTATTTCTAAAATTAATATCCAATTATACTATCCTCCCATTGATGGAACTTTTCTGTTACGTCTCACTGTCCTAAGATATGAAGGCCTGTCAAAATCTGGGCCTGCTCACCTTTCCAGCCTCTGTGCTTGATATTCATTCATTCACCCCTCCAAACTCTCCACTCCAGCCCTTCCTTCCCAGTAACCTGCATTCTCCTCTTCAAATTGTCCACGAACATTTGTCCTTGGACATGCCCTTTTCTCAGCCTAAAACACACATCCTCTTCCCCTTCTTGTCTTTCATGATCAAAACACCCTCAGCCTAGATGTCTTTTTCTTCAGGAAACCTTCTTGTCACTCCCAAATCCCAAGAGAGCTCTTCCTATATCCTCCCGAAGAAGCCCATACTTCCCTTTTATGACACTTTATCATGCTAAAGAGGGATTGGTGTGGCTTCCACGAGGTCAAGGAGTTTGCCTATTGCATTCAACCTGACACATAGCAGGCATGCAATAAATATGTGTTGTACAAATGAGAGCAATGAAATAAAAGAATGAAAAACAAATAGGAGTAAATTGAGAAAAATCTAAAATTCCAGATACCTGCGTTTGACAGTCACTTTATATAGGAAGCTGAATAAGAAATGAAATTGATTTTTTTCTATGCTCTCAAATAATTTAAAAAGCAGCAAATACTCTGACATTTGTTTATGCAATTAAATAGAACAGCAGAAACAAGATTAGAAATTACCAAACATTCCCTATTAACCCTGAGTTTAAGTAGTCAATGATACTCAATGCTCTTTATTAAGTGCAACTGAAATGACAAGTGATTGTGATGGCTTCAACAGCAGATACTATTCCCAGTATGAGAAATTGTAAAAGACCTGAACTGAAGTGAAATGTTATTACTAACAACCAGTGAGAAGTGTGGAGCAAATTCTGAGCCTCATAAATGAGTTCCATCCCCAAGAAGCTTACTTTGTCATTGCACTATTATTTTTAAGTGACTATATTTCCATACATCCTAAGTCATTAGGGAATAGGATCCTTTTTAATAACTCTGAGTTTGAAATCTATGACTTCAATGAAAAATAACACAGAAAAGGAGTATATTATTACAAGTGAAGATATACCACGTGTTCATATTTATCTGGCCCTTCCCAGGATTTGAGGCATTACACATAGTGAAAAGTGTGGCTGTAATGAGGCCCCAGTCCCTTTAACCACCAAACACTTTCTGTAATTTTAAATGGTTTTCATGAAAGTCTTTCTAAAATATATTATACTGCATATTTTAAACCCTTTCTTGATGACCCAGGGTCACTTAAGTGAATGAATTTTTTTTAACTTTTTTTAATGTTTTATTTTTCATTTTTATGGATACATACTAGTTGTACATGTTTATGGAATACATGTGATATTTCGATACAAGCATACAATGTGTAATGATCAAATCAGGATAACTGGAGCATCCATCGTCTCAAGCATTTATTTCTTTGTTAGGAACATCTCAATTCCACTGTTTTAGTTATTTTGAAATATACAATAGAGTACTGTGAACTTTTATTGTAGCACTATTCAAAATGTTTGTTCTTGATTCTTGTTACTGAAACACCAGGGGTTTGGTTGAGGTCCCGCTGCGCACCACACAGAAAGCCAATCACTGAACCGAGTATTACCAAGGAAGAAGGCCTTAATCAGGTGCCGTAGCCCAGGAGACACGAGCTCAGTCTCAAATCCATCTCCCTTACAGATTCAGGCCAGGGATTTATATAGCAGGGAGGAAATGTAACAATGTTTAAGAAAACAAGAACTAGGGAGGGGCAAGGAAGTAGTCATGGTGAATGAGTGCAGTGTTGTGGTGAGTTTCAGTCCTTTTTTTGAGGGGCCTGAAGGTTATTTCCTGAGGAAGGAACTCAGATAAAACAAAAGTTTCAAACTTTAAGACCAGAAGGGTTAGTTTCTATGTTTATCAAAAAGAACAGTCTATGGGACTATTGGGTTGGTTTCATTTGTATCTATACTTACCAGAAGATCCCTGACTGCCATGGCTAAGGCAGCACCCAATCTCTCTTGTATGTCCCTGGCCTGCTTCATTTTTCTCCGCTGCATTTTGCGTTTTTTGTTGTTGTTGGTGGTGGTGGTTTTGAGACAGAGTCTCACTTTGTTGCCCAGGCTGGAATGCAGTGGCCCAATCTCAGCTCACTGCAACCTCCGCCTCCCGGGTTCAACCGATTCTCCTGCCTTAGCCTCCCAAGTAGCTAGGATTACAGGCACCTGCTGCCATGCCCAGATAAATTTTTTGTATTTTTAGTAAAGCCGGGATTTCACCATGTTGGCTAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCTGCCCGTCTTGGCCTCCCAAAGTGCTGGAATTACAGGCGTGAGCCACCACACCCAGCCTTCTTCAGTGCATTTATAAATATTTATTTGTCTACTTGTCTCCTGTGTGACTTCCCCCTCTAAACTAGAAGCTCTATGGAGGCGAGGCCTATGCTCGCTGTTACAGCCATACTCCTCAGAACACTGTGCTGCTTACATCGTAACTAGAAGACTGTTAAATAATAGACCACTGTAGTACAGTACTCTCAGGGGCTGTTGAGTTGTAGAAAATTATTTCCTTTACATTTGCCCAACACAAACATCTCTGCTTTCAGTTGTTTTGCTATTTTTATAGTTTTTGTTTTGTTTTTTTTTCTCCTTGGATGTCACTTCTTACAATGGCGATTCTAGCGGCCTTAAAATCAGTATTGCCTCTTTCCTATGACTTGATGCTCTTTATCTCTTACGTCCAGGAAATGCTGCTGCTGTGTCCAAAATAAGAGTGAGCCAAGCCGCAGAAGCGTGCCTGTGGAGGAGAGCATTAGCGGAGTGCGCATGGCCTGTTGTACTGCCTGGGCTAATGCTCAAAGCTGTGCAGCATCAGCAAAAATGACTCAGGGCCAAGTTTCCTCAAAAAAACGAGTAATCGAACACAATCTTATCAGAGATCCCTTCCAATTTTATTATTCTTTCCAGTACTTTCCCTGAACTACAGCAGTAGCTAGTTTGGCCACTCCAAAGTCTTTTTCTTCCTAACTTCAACGTTTAGCTCCTTCATCCGTCTAAATAAAGAAATTGGTAGTGTATTACCAAAAGGAAAGTAAGATTGTGCTCACCATGATGTAATGGATATGAATTTTAACGTTTTGTCATAAAACATATTTCTTTATGTCGGGTGGGGCTGGAGGGGGAGTGCAATGTGCCTGATTAAGGAACAGGTTCTTCAAAGTCTTCAGAGCTAAGACACTATTCTTTAAAGGCCTCCTCAAGAAACACCCAAGCCAGAAAATCTACGTGAGTCATGTTTGTCTCCTCTTTCTTTCTTTTCTCTACTCTGGTTCTACAGGAAATTGCCATGGGACATTTGCTTCTTTATTTGCATTTCAAATTTCAAGTTTTTAATTTGTAATTTCAAAACTATAATTGAAAACATTGTACATCTTCGCAAAAAAGTCCCCACTATAAAGTCCGTGTAATAAATTTCTTATAAAATCCTCACCTTTGAGGAGTGATATGCTTCCCTTTTCATGACAAAGGGTAGAGGTTAATGCATCGTGCTCCCCTTTTAGCCCCAGCTGTTAGGAAACTAAGAGACAAATGTAAGCCTCCATCTTAATGCACCTACTTCCTTTGCCTCCTTTGTTTCTCATTTACAATTTTTACTTTATTATTTTGATTGTATAACGACTTATATTATGAGCCATCTTAAATAATTTTTGGAAAAATATATTACTGAATTACATTTCATGAGAATATTCTAACACAAGGCCACGCGCAGCGGCTCACACCTGTAATCCCAGCACTTGGAGAGGCCGAGGTGGGTGGATTGCTTGAGCTTAAGAGTTCGAGACCAGCCTGGGGAACATAGCGAAACCTTGTCTCCACAAAAACTACAAAAATTACCTGGGCACGATGGGTCATGACTATAGTCCCAGCTACAAGGATGGCTAAGGTGGGAGGATCACTAAGGTGGGAGGATCACTTGAGCTCAGGAGGCAGAAGTTGCAGTGAGCCGAGATTGCACTGCTGCACTCCAGCCTGAGTCACAGAGCGAGACACTGTCTCAAAAAAAAAGAAAAGAAAAAAGAATATTCTAACACAGGCAAGAGTGAAAGATGTCTGGACAATACATCCTCTTCTAGGAATTCGTGTAACTGAGAACCAACTTATATACACCATGTCCCAGAAGGAAGTGCTGATCTAGTATAAATAGGATCTTCACCAGCCTGAGAATTCAAGGGCAGAACATTATTTGATTCTTGGTTATATAAAGGGCATCTCTGTCACTCAACATAGTGCCATCACTTAAGCCTAACTTTGAACTATAGGCAATTGTTACCCAGAACAAAAGGGACTTTTTTTCAGGTAATGGATGAGGGAGGCAGGACCTCTGTAGGAAACTACTACTGAAGTCATGTTAAAACAGAAACAACCACCACAACAAACAGCACCCCAGTCCCGGAGATCATTAACTGAACTGCTAGTGGCCACTGTTCCTATGCAGGCAATGTAATTATTTGTAAGCGCCTCTTAGCCTAGGGCATTGGATCAAGAATGTGAAGTGACAGGAAACGGGAGAACAGGAATGTAATTGATATCCTGCCCTTACATTATTTCCTGAATGGTCTCCTCCCAGACTTGATGCAAGGAAGCACTCACTTCCACCTCATCCACCCGTTAAAATGCCAACCAATAAGAATAAAAGAAACCATGAACTGTTTCACTCATCTACTATTTTAGAGCACAACAAATGATAAATCCTGAAAAAAACGTGACTTACTGTGTCTCTAAGAATACTGGGGAAAACCCTCAGTATTTATAAACCATTATTAACTGCCATTTTTGTTATACAACACTTTTATGGTACCAGCCAACTTGATACCTGCTATAGGGTTTCCACAGTTATAATATCTTCAGTTTGTTCAAGGTGAGTATGGTGTCTGTTTTCTCAGCCTAAAAGACAAATACGCTGTGGCAACATGTAAATAGATGAGCTCAAATGTATTGAAGTAGCACACACACAAAAACACATTACTAATGCTACAGTGCAAAAGATAATACTGGTTTGTATATAAGGTGAAACTTACATACAAAGGACCATTTTGTTAGTGTTCGAATTGAAGTATCAGTTAAAATATATCTAATGATTTCCATATTTGCGTATCTTAATTTGTTCTGACCTTGATACATAAAGTTCTCAACTATGAAAACATTGTGCAAATGAAAACATATATCATCTGTGCTGCTACATTTATGTCATAAATGGGCTCCTATAGGTTTATGAAGTCACAATTCCATTCTTTTTGCGGACTGTTTCACCTGCCGTCCATATTCACCCATCTGTTTTACCTGCAGACAAAGAAGCAAGACATTCAAAGCAGCTTAATTAACCTGCTTCCATCACAACTGCATTTGTATAGAGAAATGGGCTTCCCAGAAATTTTAGTTTGCTCCCGTTTGTAGTAAATAGATCTTATGTATAGCCTTGTTTATATTGGTCACTGTGTGGGAAATACATTTTTCATGTGGAATGCAAAGATTCGTTTCAGTTTAGGTGTGGCAAAAATAACCAGAAATTTATAATTAATAAAACTTGAGTAAATTATATTTCTTTAAATTTTTAAAATATTGTATCCACTTGCTTATTTCTAACTTAGTCTTTTAAGAGTAAATGTATTTACATATTAAGATTATAGTTATATATCCATTATATTAAGATCATAATATTATATAGATCTTTTGAATTCTTCTTTCCTTTAG
Seq C2 exon
AAGTCAATCCAAGAAGAAAAACGAAGACCAAGGAAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095777:ENST00000265944:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.519 A=NA C2=0.619
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development