RnoINT0097181 @ rn6
Intron Retention
Gene
ENSRNOG00000018478 | Myo3a
Description
myosin IIIA [Source:RGD Symbol;Acc:1560083]
Coordinates
chr17:89153170-89156079:+
Coord C1 exon
chr17:89153170-89153276
Coord A exon
chr17:89153277-89156038
Coord C2 exon
chr17:89156039-89156079
Length
2762 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
ATTCTTTCTACTCCCTTTAGAAG
3' ss Score
7.05
Exon sequences
Seq C1 exon
GTGTCTCTAAAGGAGAAGAGTCAAAAATATTGAGACCTCCAAGACGACCTCGGAAACCTAAAACATTAAATAACCCTGAAGACTCCACATACTACTATCTACTCCAT
Seq A exon
GTAAGTGGCTCATTCTTACAATTAAACTGAAGACCAGTAGAAACTGTGACTGCATTGGCTGCCTCAGAAGAAGGCCTTACAACATGAAGACCCTCCTTAGATTCTATTTCAGAGATACCCCATTTGATGGCACCTTTGTATTCCTCTAGCCCTCTTCCTCACGGTCCTGTCCTCTCTTGTAATCTTGGACCTACACTGAGTTCTCCTAGAAACGTTTTCTGTAGTTGCTTTTCTTAGTTGGGGTTTCATTGCCATGAAGAGATATCATGACCACTCCAATTCTTATAAAGAAAAACAATAAATTAATACAGTTTCAGAGGTTTAGTCCGTTATCATCTTGGTAGGAAATATGGCACCATGCAGACAGATATGGTACTAGAGAAGGAGCTGAGAGTTCTACATCTTGGTCTGCAAGCAACAAGAAAGAGAATGTGATAACACTGGACATAGCTTGAGCATAGGAGACCTCACAGTACCCCCACAGTGACATACTTCCTCCAAAAAGGCCACACCTCCTACAGTGCCACACCCTATGGGCCAAGCATTCAAACATGAGTCTATGGAAGACATTCCTATTCAAACCACTGCATCACTTATCTGAGTTTACATACAAATATCAACCTTAAAAAAAAGTTTATGTTGTGTGTAGTTTTATGCTACTACCTTTGCTCCAGGAGGATGGCCGTGCAACCAACCCCTTCCAGCTTTCCTTTTGTTCTACCTGCCTTTAGCTCCAGGAGGTAACCACACTACATGCCTTGAATATGTGGATAAAAGACACACACACACACACACACACACACACACACACACACACACACACACACAGTTTGTTCCTTTCCAACTTGTCTTAGGACACAATTGCTGGGCACCACTATCTCCAGCCTGGAAAAGCATGCCCTTAACAATATTTTTATCTCTGCTCCTCCCACCTGCCCTTAACTTCAGTAGCTAGTCTCACCTGGCCCCTGTCAAACATCCGTGACCACCCACCTGTAGCTGTGGCCAGAGGTCCCAGCCCCTCCCTTACCTCACATGGCTGCTGGCTTCTTTTTCCTCCAAAGCATACAGAAACTCTCCCCCTCTCCTTTCTTGCATCTACCTGCCTCCTCCAGGGACCTGGAAGTTCCACCTATCCCTTCCACCCAGCAATTGGCCCATGGCTTTATTCACTGATAAATTAAGACCAATTGGGAAACAGGACGGCATCAGAACTGCTGGTCCATTGTGGGAAACCCCTCCAGATAGAGACCTTCATTTAAGGGAGTATGTTGTCAACCAAGTAGTAAAAGAGAAGTGAATGTTTGTTGTGCTTCTGCAAATTCCAGGCCAATAGTGAGATGTATTCACAACCATTGTGAGAGCTGATCCTAGAACCAGCTCTTAATATTATGTTCACATCTCAGGTCAGAATTGTGAGACACAGGTAAAAAGCTTAGCCTTCCCATCAGGACCCTTAACTTTATTGAGGTCTCCGGGATCCACTCAGTTGGCAAGCATGAGAAGTCATTGGTATGGCCTCTACTACACTCTATTCCTTTCCCCTCATGTTTCAGTCCTCCTTACACACCACTGACATCACCTTGGTTTCTCAAAACCAAGAGGATCATGTCCTTCCTTTTATACCTGGCACCTATGCCAGTTGTTCTACCTTATGCCTTTTGGTTACTCAAGTATCCTCCTTCTCCAACCAAGCAAGAGTCCCCCACACCATGCCCCAATTGTGACTATCACCACTTCTCAGTCAGACTATTTCAGGTTTCAAATCTCATCCTCCCCAACCTACACCAGAAAATATATCTAAACTGTAAATCTGATTATTTTTCTCCTCCGACTGGCTCAGCATAAGGTCCAGAATCCAATGTCTTCTTCACTGGGCATAGAACTTCTGACCCATGTTGACACACAATACAAAATTGCTTAAACTCTCGCAGTGATCAACATCCTCTAAGCCTCCAAAGCCTTTGGCCCCAGAGCTCCCTCCATTTCTAATATTTATTCAATCTACATTCTGTGCTGCCACAGAGGAAAACGACTTCCCCATGCCCTTGAAAACCCAGAGAATCTGAGAGTTCACTGGAAACAGGATTCTTACACCACAGGCAGAAAATGTAGCTCACACTGGGTCAATGTGCCATGTTTCTGCATGATGCTTTGCTCCCTCGTGATGTTGCCCAGAATTCAGACTTACAACTTCTTCTCCTTTCAGTTCCTTAGACTAATCTCATTGACCACCATGATGCCGACCATTGCCAAGATCAGAAACTTTGTCCCTGGCTTAGATCTCTCCTCTAGTTCCAAAAGCAAATAGAAAGCCACCTAAAGTTTATTACATAATCTACATGGACATACACCCAGAGAGATCCAGGTATAATCATTCATACAGCTGGGTTGGGCTATATCGCATGTCGTACAAATTGCCGTGAGAATACAAAACGGCTTTTAGTATAACCATCAAAGCAGCAAATTCTACAACATTTTTATCACTCCAAAATGAAACTCTATCCTTTATCAGTCACTTCCACACCATTCCTGAGCCATGTCCTAGAAAAATCACTCATCAACTGTCAACTATGTATTGCCTCTTCTAGAATTCCATATAAACAGAATCACATAGTATGCGTTATATGAAATACTTTTGTCAGCTAGAAATCACTTATCCTGATTCTCCCTCTCTCTCTCATCTACCATTAAAATAATAAATATTATACAATATGATTTAATACTACTATATATCTTTTCATTCTTTCTACTCCCTTTAG
Seq C2 exon
AAGTCAACCCAAGAAGAAAAACGAAGACCAAGAAAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018478:ENSRNOT00000025053:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.722 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]