BtaINT0098112 @ bosTau6
Intron Retention
Gene
ENSBTAG00000002123 | MYO3A
Description
myosin IIIA [Source:HGNC Symbol;Acc:HGNC:7601]
Coordinates
chr13:26918966-26924929:+
Coord C1 exon
chr13:26918966-26919072
Coord A exon
chr13:26919073-26924888
Coord C2 exon
chr13:26924889-26924929
Length
5816 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGT
5' ss Score
8.31
3' ss Seq
AATTATTCTATTCCCTTTAGAAA
3' ss Score
7.52
Exon sequences
Seq C1 exon
GTATCTCAAAAGGAGAGGAGCCAAAAATATTGAGACCCCCAAGGCGGCCCCGAAAACCCAAAACACTAAATAACTCTGAAGACTCCACATACTATTCTCTGCTTCAT
Seq A exon
GTAAGTGTGTGTGTTGGGTGCTTAGTCGTTCACGTCCACCTCTTTGCGACCTCATGGACTGTAGCCTGCCAGGCTCCTTTGTCCTTGGAATGCTCCAGGCAAGAAGACTGAAGTGGGTAGCCATTCCCTTCTCCAGAGCATCTTCCCCACCCAGGGATTGAACCTGTGTCTCCTGCATTACAGGCAGATTCTTTACCTTTTGAGCCACTACTGGCTTGATCTTTTATCAAATGGGAGCTGTAGTGTCTCCTCTAATGGCCAGTAAGGAAACTGACCACACAGTCCCGTCAAGAGGGAGGGCTCTTTGAAGGAGACACTCGTTGGCTTCTCCTTCCTGGCCTCTCCCTGACTGATGACCTGGACACTTGCCTGTTCTCTAGCCTCTCTTCCTCAGGGTCCACCCCTCCCCCACAGGCCTATGGCCTCCCAAGAGTTTTCTCAGCTAGTCCTTGAATCTGAACCTATATGCAAATATCAACTCAGATAGAGAAGGGCATCACAGCAGGAGCTCTCCAGAGAGGGACCTTAGTGTGAAAGGGTGAGTCTCCAAGGAAGGGAGAGGGAGAAGGAGATACTTATCGAGGACCTTTTAAATTCTAGGTCCAGAGTGACCTGTGTTCACGAGCATTGTGAGATCGAATTCTAGAAAGAGCCTGAAAGGTGACATCCCTGTCTCCCGAATCAGGATTCTGAGACATGGATGAGGCACTTCTGAGCCCTGAGGGCCATTTGCTGTCCTCAGGTCTTCTGACTCCACATCTGTTGAGTCATAGTGAGCAGCCTGGGAGCTCTTGGCATCACCCTCGCCAGCCTGTCCTCCCTCTCAGGTTCCTGTTCTTCCATTAATCCACCGTCATCCACCTGGTTACCTACACCAGGAAAGTGGGAGACAGCTTGAGTCTTGCCTGCTGTCTCAAACCCAACATCAGATCAGTCACTCAAAAGCGTGTCTTCTCCCCACAAAGGCTGGCTCTGATTCATCTTCCTCCTCTGACTACCTTGGCAACTACTTTATTCCAGACTATCTCATTCCTCACCTGGATAGTTCAGACCCTACCTAATTGCTTCAAATCTCAGCTTCTGTAGTCCGTCTCGCCCTGCATAGTGCCTTTAATAGCTTGGCCACTCCTGCATCAAATCCATACGCCTTCCTTGTTGGACCAGGGACAGCTCTTCCTCCCAGCCCCACTGACCAGAGTTACCTACTGGCATCTCTGCCGGTGCACAGCCTCCCATGCCCCTAAGTCTTTTGCTTCTGCTGGTCCTTCTATTTGGAATACTTATCCCCTTCCACCTGCATGGTTGAGAGAGCAACAGTTCTCCATGTCCCAAAGAACCCAGAGAAGGTTTCCCATGAGTTGGAATTTTCTCCTATCTCCCCAGCATCAAATGAAGCTTGACTTCCAGATCAGCCGTCTCCTAGTCCTCTTCCTTCTCTCTGGTGGTTTCTCTCCAGTTTCTTTGGAAGGGTCCTGTTCCCCTTGGTGTTGCCTAGGATTCAATCTTAGATTCTCTTATCATCCCATTACCTTCAGACATTCTCATCAGCTGCCATGACCTCAGTTTCTACCAATTCCTGAATCGTGGTCTCTGGCTCAGACCTCCCCCTCTCTCCAAACTCAAATATCAAAATGCCTAGTGTTCATTTTACGTATTCTATGTGATGGACAAAGGCACCCACACATGTATATGTGTGTGTGTGTGTGTGTGCATACGCACACCTACATACTATGGATACACATATACACATAGAGAGAGACCTATATACTATAGGTCCACACACACACACGCATATGCAGGCACAGAGTTTTATTGAGATGTAAGTCACATGCCATACAATTCACCCATCTAAGGTATACAATTAAATGTTTTTCAGTGTAAATGCAGAGTTGTACAACCATCACCACAATTTTACTTTATTTTTTCATTTATTTTCAAAATACAACTTTTAATTGAAATATAGTTGATTTTCAATGTTGTAAATCAGTATACAAATTAAATATATATAGCTGATTCACAAGTGAGTCCCAACTCCCAAGAAGATTATTACTTTGTCATCATACTATTATTTTTAAAATTAATATAAAGTGTTTTCATACATCTTAAATTATCAGTGACTGGAATCTGTTTTATAGCCCTGTCTCTTGAAATCTGTGGCTGCAGTGAAACATAAAACATAGAAAACTAGTATATTATTATAAGTAAAAACACACCATGGGTTCATATTTATCTGGCCCTTACCTGGATTGGGGGAGGTTACACATTAAGTGAAATTTAAGCTGTGATGGAGCCCCATCCCCTTTAAACATTAAAACACATTCTGTACTTTTAAATGGTTTTCATAAACATCATTCTAAAATATGCTGCATATTTTAAGCCTTCTCTTCATGACCCAGACCACTGTAGTCAGCAAAAATGTTTGTACTTTATTCACATCTGTGCTTATCAAAGAAGCTGCCTGACAATCGTATCTAAAGCAGCAGCTGCTTCTGTATTTGCCTGGCCCAGCTTCATATTTCTTCATAGCAGGTATAAATATGTATCTGCGTGTTTCCTGTCTGACTCTCCCCTGTGGACTAGAAGCTCCAGGAAGACAGAGACTTTGCTCCTTCTTATAGCCCTGTTGTTGCTCATCATGAGCCTATTTGCTAAAAAAAAAACAGGACATATTTAGACAAGATTCTCAGTGCTGCCAGACTGTGGACATGACACCCCTCGTGCATGCTTGACATGAGCAGCTGTTCTGACAGGTGTCTCGCCGATTGATACAGCTTTTTTTCTCCTTGGATATCGCCATTGACTGTGGTCATTCTAGCTGCCTTCATACCAATACCAGCTCTCTTCTGTGATGGGATTCTCTTAACCTCCTACATCTGGGAAATGTTGCTGTTGTCCTGTCCAAAATAAGAGTAAACTGAGGCTGAGAATCGTGGCTTTGAGGAGATAATGTTAGCTGAATACTTTGCTCTGTTGTCACGGGGTCTGGTGTCTGCTCTAACGTCCAGAAATTGTGCAGCCATCAGCAAAATGACTCAGGGCCAACAGCTTCCTCAAAAAGTGAGTGATGGACACAGTCCCATCACAGGCCCCTTCTGGTCCCATTATTTTTCTGGAGTCTTCCCCGAACATAGCAGCAGGTGGTTTGATCACTCCCAGGTCGCTTATTTTAATGTCTGCATTTTGGCTACTGTCTTAATCTTTGTGAAGACCTCTGAGTACATAATGCATTCATGTATTTCCAAAAGAAAAGTAAGAGTGTGTCCATCATATTGTAATGGAGGCGAATTTTCAAGTTTTACCATAAAGCAAATTTCTTTATGTTACACGGGAAGGAGAAGGTATAAGAGTCAGTGACCGAGGAAGGGTTTCTTCAGAGTCTGCTGAACTCAGACCTCTGTTCTTTCAAAAGCTTCCTCAGAATACATCCTCACCAGATCTCATACTTAAGTCATCTCTGTTTCCTTGTCTTTCTTCTTTACTCTGGTTTGGCAAGAACCTGCCACAGGACATTTGGTTCTTTATTTGCATTTTAAATTTCAGGTTTGCAATTTGTCATATCAAAACTTTAATTGAGGACTTCCTGTGGTCCAGTAGTTAACATGCCATACTTCTAATGCAGGGAGCATGGGTTCAATCTGTGGTCAGGGAGCTAAGATACTGTGGGTCATGCAGTGTGACCAAAATATAAATAATAAATAAAAATTAAAATATAATTTAAAAAGCCTAATTCAAGACATCATTGGTCTTAGCAATTCAAACATGCCTCATTTTATTGTGCTTCACGGGTACTGCTTTTTTTTTTTTTTAACAAGTTGGAAGTTTTGTGGAAACCATTCAGAAAGTCTATTTGCACCATTTCCCCAACACAGTTTGCTCACTTCCTGTCTCTGTGTCCCATTTTGGTAATTTTTGAAATATTTCGGACCCTCTACCAGCATTTTAATGGCATTTTTAGCAATAAAATATGTTTAAATTTTTAAATTAAGGTATGCATTTTTTAGGCATAATGCTATTGCGCACTTTATAATAGACTATTGCCTTCTCTGATAATAGACTATAGTGTAGTATAAACTGGGCTTCCCTGGTGGTGTTAGTGGTAAAGAACTCTCCTGCCAATGCAAGAGAGATGTGGATTCAATCCCTGGGTTGAGAAGATCCCTTGGAATGAGGGATGGCAACCCACTCCAGTATCTCGCCTGGAGAATCCCCGTGGACAGAGGAGCCTGGAAGACTACAGTTCATGGGGTCGCACGGAGTCCGGCACGACTGAAGCGACTTAGCACTCATGCGCATAGCATAAACCGGCCATACCACACAGCATGTGGGATCTTAGTTCCCCAACTAGGGATCTCACTCTTGCATTGAAAGTGCAGAGTCTTAACCACCGTACTGCCAGAGAAGTCCCATGTAAATGTAACTTTTATGCACCAGGAAACCAAAAAAAAAAAAAAAAAAATTGTGTGATATGCTTTATTGTGATACTCGCTTTATTGCAGTGGCCAGGAACCAAACCTGCAATATCTCTGAGATGAGTGTGTAAGTGCCCCTAATATAAAGCCCTCAGTGATAAAATGCATATTAAATCCTCTTCTAGGTCATACAGTATCCTTCTTCATGATGAAGAATGCCATCACGTACATCCCTAACTTTAGCCCTAGAGCCTAGGAAACTAAGAGACAATTAAATGTAAAGCTCTGTCTTAAAGTTCATATTTCTCTGCCTTTGTTCCTTATTTACAGCTCCTATTTTATTCCTTTGACTACATAATTGCTTCTATTATAAGCCATTTTAAATAATTTTGGGAAAAATATACCACAGAATTACATTTCATAAGAGTATTCTAGCACAGATGAGAGTGAAAAAAAAGTGCAGACAATATTTCTTCCTTTAAGAATTCAGTAATTGAGAACCAACTTGTACATAGCATCTCCCAGACAGAAATACTGATCCAGAAGAAAATGTGGTCCTTGCCAGGGCAGAGCAGTATTTGATTCTTGGCTGTAGAAAGAGGATCTCTGTTACTCAGCATCATTCAGCATCTCTTCAGATTATAGAAAATTGTTATCAAGAATAAGAGAGACACTTTTTCAGATAATGGATCAAGGAGGCAGGACCTCTCAGATTAAAGCAGGAACACCACCCTGGTCCCAGGGGATCATTAGCTGAACTGCTGGGGGCCGTTGTACCTCAGCTGGTACATCATTGTTTGTAAGCATCTCCTAGCCTAGGGCTCTGGGTCAGGAACATGAAGTTAACAGGAAATGTTAAGGAGGACAGGAATGTCTTTGGTATCCTGCCCCTTACATTGTTATTTTCAGAATGATCCACTCCCAGACTTGATGCAGGTAAGCATTCACTTCTACCTCATCCACTGGCTATAATACCAACCAATAAGAAGAAAGCAAACTATGAACTTTTTGACTCATCTAACATTTTAGGGTATTAAAATGATAAACGATGAGAAAAAGGTGATTCAGTGTATCTATAAAGATAATGGGAAAACCCTTCATATTGACAAACCATTATTATTAATAATTGCCATTTTTATTATCTTGCATTTTTACAGTGTCAGTCAACTTGATGCTTGCATTAGTGTTTCCACAATTATAATATCTTCAGCTTGTTTGCAGTATTTGTTTCCTTAGCCTAAAAGACATATATACTCTTTTCAACATGTAAATATAAAAGTTCAAATATATTGAGCTAAAACCCAGTGAAATATAATTTTATATGTTAATACTATAGTAATATATCCATTAATTATATTAAGATCATAATATTATATAGATTATTTTTAATTATTCTATTCCCTTTAG
Seq C2 exon
AAATCAATCCAAGAAGAAAAACGAAGACCAAGGAAAGATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002123:ENSBTAT00000002745:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development