MmuINT0113508 @ mm10
Intron Retention
Gene
ENSMUSG00000026761 | Orc4
Description
origin recognition complex, subunit 4 [Source:MGI Symbol;Acc:MGI:1347043]
Coordinates
chr2:48933550-48936862:-
Coord C1 exon
chr2:48936772-48936862
Coord A exon
chr2:48933623-48936771
Coord C2 exon
chr2:48933550-48933622
Length
3149 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAAA
5' ss Score
-1.7
3' ss Seq
TTACACATTTTTATATTTAGTTA
3' ss Score
6.18
Exon sequences
Seq C1 exon
GCATTTGATTGAGCTACTCAAAAGAACTGCTATCTATGGAGAAAGCAATTCTGTACTCATTGTTGGACCACGAGGATCAGGAAAGACCACA
Seq A exon
GTAAAAGACTTAAGTTTCTCATATATCATTGCTTTAATACACATTTGAAGTTTTTATATCAGATACACTAAAAATGTTTTTCGTTTTATTGTCTTGCAACATTCTTTGTTTTCTATTCCTTTTAAATGACAAAATCCATGCAGGTATTCTACAAAGTTAGGTTGTGGTATGGGAGTTGATCATGCTTTTTATGTTCTCTGCTTGGTATATTGCCCTATACTGGGGCAGGGATTTCAATCCTCCCATCTGCCACTGAGAGTATAAGGTCCATGCTTCCATACATACATGGGCTCTGAGGGTCCCAACTCAGGACTTCACGGGTCATCATCATACAGTGATTCCCCACAAGCATTTTTACCCCTTTTTACAGTTTTCACAGTTTTACAATTTATTTTTAACCTTCAAACAAATCTTTCATGTCAAGGTCATCAGTATTTATGTCATATTTCTCTTCTTCTGACTTAGTTAATCTCAAAAATTCTTCTCCCTCTCATCTGTTCCTTTTTACAATATACAAAACAAATACATCAACATTTGAATGTATTACTATTAAATTTTAATGTGCTAAGTTGTATAAATTGTATTTTTCTAGTATTCTGTAATAGCAAATTAATATTTTGTTCAGGCATATTATTATACCTTAAAAATAGTTAAGATAGTAAATTAAAACTGTTTCTATTTTTTAAAATAGTACATGTTGGTTCTATATTATGTAAGATGAAGAATTTTTATTTATACTACCATTTCCATTTAAAGAACATAACTTGGTAATTGACAACTTTATTACTGTTTCAAGAATTTATACATTTCTTATAAGATGTCTTACTCTAGCCTGCTTTGGTCCTCCTGCTTACTTGGTATAATTTCCAATTCTTTGCCATTTGTTGTTGTTTGGTTTTTATAATTTTCTTTTGCTTTAATTTAACAACTTTTTTCAACAGAAGAACTATGTAAAATACATTTGTGGTTTTGATTGTTTTCCTTAATGTATCTACTGCCTGGGGTTATAGGCTTCCTCACAGGTGTTTTTGTTTTTGTTTTTGTTTTTCCTCTCCTTAGAATTGCAAGGATTTTGCATGAATTTTGTTTTGTGGAGAAAATCCTGGAGTGAGATTTTCTTTAGTTTTTCTTTTTTCTTTTCTTTTTGCTGTATTTAGATTATATAAGTGGCTGAGCCTCACAGAAGTCTCAGATCCCTGTGGCTTAGTAGGACATTTTATCTTTCTTTGTACCGTCTATCATAACAGTGTACAAATCAAAGGAAGCAAGCTTGTGTAGATGAGCTCAGTGGAAGAGTGCTCAGACTCTCTTGATACACTTAGGAGATAAAAAGTTTTACTAATGTCTATCCTTTAAAGGATTTGAAATGTTTTCTAATGTGTGATTCATGAATTGAAACAAAATGGCTCCCAAGTAAAATATAAATGTCAGTGAAATGTAAGAGATAGGAGGCAGCACACAATGCAATACTTTTTAAAAATACGTTGAAAGTAGTGTTGTTAGGGAGAAAGTTTGTATGAGTCACAGATGTTCTCTTGTGATAGAGTCGATCTGATTGAAAGATAGGAAAGTACTGTCTTATCTCTTATGGTTGCTTTTATTGTTTCTTCTCAGCTGAACTACTACAGAAGTCAGACAGTTGTACCCAGAGAGGTTTTTTTGTTTTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTTAAGAGAATCTAGATCAAGAGTACCTGTGTATAATTCCATGTGCTTAAAATCCACACATACCAAAGTTAATTTCTATGTTTACTATCCTTTTGTAAAATCTGTCTACTCTCTTTACTTATATGTACACCTAACCTCTGTTTTCCTGGACCACTTTTTTTTTTTAAATTTTATATCTTTTTTCCCCACATTTTTTATTAGATATTTTCTTCATTTACATTTCAAATGCTATCCCAAAAGTCCCCTATACCCTCCCCAAGCCCTACTCCCCTATCCACTCACTCCTACTTCTTGGCCCTGGTGCTCCCCTGTCCTGGGGCATATAAAGTTTGCAAGACCAAGGGGCCTCTTTTCTCAATGATGGCCGACTAGGCCATCTTCTGCTACATATGCAGCTAGAGACACTCACTCTGGGGGTACTGGTTAGTTCGTATTGTTGTTCCACCTATAGGGTTGCAGACCCCTTCAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGTTCTATCCATTAGATGACTGTGAGCATCCACTTCTGTATTTGCCAGGCACTGGCAAAGCCTCACAGGAGACAGCTATATCAGGGTCCCTTCAGCAAAATCTTGCTGGCATATGCAATAGTGTCTCCTGGACCATTTTTGATGTGAATAAAAGTGTTTTACATTGCCCTTAATCTTCTTCATTTACAAATTTTATATTACAATAATACATTCTCAGTATAAGTACATTTTCATAGTAATTATTATTGGTAATCTTACAATTTCATCTAACCTTTTACTAACTTTTGTATTGTTTTTTGTTTTGTTTTGTTTTTTGTTTTGTTTTGATTATTTGTTTGTGAAACAATTTCATATAGTTCAGGTTGCAGGTCATCCTGACTCTTCAATTTCTCACTCTTTGCCTTCACCTCCTGAGTGCTGGGATTACAGGCTAATTGCTGCTGCGTCCAGCTAAATTTCATCACTATGCTTTTCTATTCTTGTTCATGAGTAAATAGTTTATATTTTTCTTTTTAACTATTTGCTATTTCTTATTTCATGACAATATGCAGACTATCAACAGTGTTGCATAAAATTGACATTGGAGGACAAACCTTTTACAACTATTTAGGTTTATTTTTTTCTATAGCTTTTAACTGCTTTCAGTGGCACCTGGTAGAGAAATGTTACTGAATAGTAAAATGTACTGAGTCATAGAGATTACAAAAGAAGGTTTTATGATTGCTTCCAATGTTTATTAATAGTTTATATAAATTATTAAGATATTAAAGTTTCAGTTAGGCTTTGCCATTAGACTTAGACATAATGAATTGTATATATCTAAACCTATTAGCTATAAAGTAATTTATTTGTTTATATTTATTCTCAACATTTATGATTTTAAGAAAGAATAGCTTCATTTTATCTTTTCCAAATTAAACATTTTACACATTTTTATATTTAG
Seq C2 exon
TTATTAAATCATGCTTTGAAAGAACTCATGGAAATAGAAGTGAGTGAAAATGTGATACAAGTTCACTTAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026761:ENSMUST00000028098:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.002 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=FE(19.5=100)
A:
NA
C2:
PF131911=AAA_16=FE(15.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types