RnoINT0105623 @ rn6
Intron Retention
Gene
ENSRNOG00000005021 | Orc4
Description
origin recognition complex, subunit 4 [Source:RGD Symbol;Acc:735212]
Coordinates
chr3:33058918-33061900:-
Coord C1 exon
chr3:33061810-33061900
Coord A exon
chr3:33058994-33061809
Coord C2 exon
chr3:33058918-33058993
Length
2816 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAAA
5' ss Score
6.53
3' ss Seq
TTACACCTTTTTATATTTAGTTA
3' ss Score
6.67
Exon sequences
Seq C1 exon
GCATTTAATTGAGCTACTCAAAAGAACTGCTATCTATGGAGAAAGTAATTCTTTACTCATTGTTGGACCACGAGGATCAGGAAAGACCACG
Seq A exon
GTAAAAGACTTAAGTTTCTCATATATCATTGCTATATTAGACATTTGAAGTTTTTTATATCAGATGACCCTAAAACAGTATTTCATTATATTGTAACATTCTTTGTTTTCTATTCTTTTTAAATGACAAAAACTGTGCAGGTATCCTACAAAGTTAGTATGTGATACAGGAATCGATCATGCCTTTTGGAATCTTGTAGTAATAAGATTTTTCAAGGAACAAGCAGTACTTTTCATTACTACCCATACAGTTTAGTTTGTGTGTGTGTGTGTGTCTGTGTCTGTGTCTGTGTCTGTGTCTGTGTGTGTCTGCGTGCATGTGCATATACCATGGTATGTTGGTGTGTGTAGAGGTCAGGGGATAACTTTGGTGTTGATGCTTGGTTCTCATCTTTTACCTAATTTAAGACAGGGGTCCTCTATATGGTCTCTGCTCGGGATATTGGCCTACACTCATTGAGGGATTTTAGTCCTCCCATCTGCCACTGAGAGTATACATACATGTTTCCTTACATGGGTTCTGAGAATCCCAAATCCAGCCCTCACAGGTCATTATTGTACAGTGATTCTCAACAAGCATTTCCTTCCTCTTTTTAACAGTGTATTATTAACCTTCAAACAAACCTTTCATATCAGGGTATATCTTCAATATTTATGTCATATTTCCCTTTTTCTGGTAATTTAGTTAGTTAATCTCAAAAATTCTTTTCCTCTTCATCTGGTCCTTTTGTACAGTATATGAAACAAATACATCAAAGTTTGAATGTATTACTATTAAATTTTAAGTTGCTGAGTTGTATAAATTGTATTTTTCTAGTATTTTATAATGCCAAATTAATACTTAGTTTAATAGATTTTATTTTTTATGAAGATACTTTAAATAGTTAAGATAGAAAATTAAAATTGTGTTTCTATTCTTATATTATGCAAGATGAAGAAATTATTTTTTTATTTATACTACCTGTCCATTGTTTAAAGAACATAACTTGGTAATTGACAACTTTATTACTGTTTCAAGAATTTTTTACATTTCTTAAAAGATTTTTTTTTTACTCCAATCTGTTTTGGTCCTCTTGCTCACTTGATATAATTACTATTTCTTTGCTCTTTGTTGTTATTGTTTTTTTATAGTATTTTTCTTTTGCTTTTGAGTTAGTGACCTTTTTTTAGCAAAAGGAGTATATGAAATATGTCTGTGGTTTTGTTTGTTGTACTTATCTACTACCCCTGGGGGATATATTCCTCCTCAGGTGTTTTTGTTTTTATTCCTCCCCTTAGAATTGCATGGGTTTTGCTTAAATTTTGATTTGTGAGGAAAATCCTGGAATAAGATTTTTTTTAGCTTTTCTTTTTCTTTTTGCTGTATTTGGATTATGTAAGTGGCTACACTACACTTAAGACATCTCAGATCCCTGTGACTTGGCTGTGATAATAGTAGTGGAGAAATCAAAGGAAGCCAGTCTGCGTAGACAAGTTCAATGGAAGAGTGCTCAGCCTCTCTTGATACACTTACGAGATGAACGTTTTACTAATATCTATTCCTTAAAGTACTTGAAATGTTTTCTAATGTGTGATTCATGAGTTGAAACAGAAAATGGCTCCCCCAAAAATATAAATGTCAGGGAAATTTAAGGGATAGGAGGCAGCACACAATGCAGTACTTTTTAAAAATATGTTGAAGGTGGTATTTGTAAGGAGAAGTCTGTATGAGTCGCAGATGTTCTCTTGTGGTAGAGTTGTCCTGATCCAAAGATAGTAAAGTACCATCTTGCCCCTTATGGTTGCTTTTATTGATTCTTCTCAGCTGAGCTACTACAGTAGTCGGGCAGTTGTACCCAGAGAGTTTGGTTTTTTTAAAGGATCTAGATCGAGAGTACCTATGATCTAAAGTAAAATTCGTGTCCTTTAAAATCCACACAACTATACCAAAAATAGTTTTTATGTTTACTATCCTTTTGTGAACTCTGTCTGCTCTCTTTACTCATATGTGCACTTAACATCTGTTTCCTGGACCCATTTTGAATAGAAGTGTTTCACATCTCCCTTAATCTTCCTCATTTACAAATCTTATACTCTAATAATACCTTCTGAGTATAAGTACATCTTTATAGTAATTATTATTGGTAATCTTATAATTACATGTAACCTTTGATTAACTTTCCTATGGTTTGTGGCCTTTTTTGTTTTGTTTTGATTGTTGGTTTGTACAGAATTTTGTATAGTTCAGGTTGCAGATCATCCTGACTCTTCAATTTCTGATTCTCTGCCTCCTAGATGCTGGGATTGATTACTGGCCTACTGATGCCCTGTCCAGCTACCTGGCATCAGTATGGTTTTCTCATTATTTATCCATGAGTAATACTTTATCTTTTTCTTCTGAACCTACTGCTATTTCTTATTTCCTGTCAGTGTGGAGACTGTTTAACAGGGTTGCATAAAATTGACATTGGACGACAAACCTTTACAACTATTAGTGTTATTTTTTTCTGTAGCTTTCAGTGACAGCTCGTAGAGAAATGTTACCGAACAATAAAGTTTACTGAGACGTAAAGGTTACAGAAGACAGTACTTTAATCTGTAATGTAGAGAAAGCTTTAGGATTGCTTCCAACGTTTATTAAAAATTTAGTTAGATTGTTAAGATCTTCAAGTTTCAGTTAGGCTTTGCCATCATAAGACTTAGACATCGTGGGTTGTGTATATTTAAACCATTTAGCTATAAAGTGATTTATTTATTCTCAGCACTTATGATTTTAAAAAAGAATAGCTTCATCTTTATCTTTTCTATATTAAACATTTTACACCTTTTTATATTTAG
Seq C2 exon
TTATTAAATCATGCCTTGAAAGAGCTCATGCAAATAGGAGACATGAGTGAAAATGTGTTACAAGTTCACTTAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005021:ENSRNOT00000006937:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF131911=AAA_16=FE(19.4=100)
A:
NA
C2:
PF131911=AAA_16=FE(16.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]