MmuINT0113735 @ mm9
Intron Retention
Gene
ENSMUSG00000038534 | Osbpl7
Description
oxysterol binding protein-like 7 [Source:MGI Symbol;Acc:MGI:1918490]
Coordinates
chr11:96919774-96920506:+
Coord C1 exon
chr11:96919774-96919926
Coord A exon
chr11:96919927-96920430
Coord C2 exon
chr11:96920431-96920506
Length
504 bp
Sequences
Splice sites
5' ss Seq
GGAGCATCA
5' ss Score
-15.65
3' ss Seq
AGGGTTCTGAGGAGGAAGAGTCT
3' ss Score
-30.17
Exon sequences
Seq C1 exon
CAAGAAGCTCTGTACATGAAAGGCCGAGAGCTGACCCCCCAGCTGTCGCAGAGCAGTGTGCTGTCCCTCGCCGACTCCCACACCGAGTTCTTTGATGCCTGTGAGGTGCTCCTCTCTGCCAGTTCTTCCGAGAATGAGGTGAGGGAGGAGGGA
Seq A exon
GCATCAGGAGAGGGAGGAGGGAGCATCAGGAGAGGAGGGACTTCTCTCCTGCAGGATGGGGGTGGGGCCTGGACATTCCTGGGTCATTTCTCACCACCTTAGCAGCCATCTCTGAGAGCGTACCCAGCTCTGTTAGATTTGTGTGACTCTAGAAACCTCTTCTCCTTGTTGGACATGCCTTACCTGTCTGCTCTCTGAAGTTATCCTTCCTGGGACCCCCTTTCCATGTTCATGCTTCTTTGACCCAGACTCTGGATCTCCGCGCCACCATCAACTTCTCTTCCCTCTGTGTCTCGCCAATTTCCCAGGCTCTTTGCTATAAGTCGGTACCCGTCGTGACAGGATGTTGTTGTTATCTTAGGGCTAAAAGTCCTCCCCTCCCTGTCATCCTTCTTTCCACCAAAGGGCTAGGGTTTTATCACATTCTTACCAGGTCCTGGGCATTGCCAGTCTGTCTACCCCTACCTTGCAATTCTTCCCGCCCAGGGTTCTGAGGAGGAAGAG
Seq C2 exon
TCTTGTGCTAGCGAGATCACCACCAGCCTGTCTGAGGAGGTGCTGGATATCAGGGGAGCTGACCGCTATCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038534-Osbpl7:NM_001081434:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.336 A=NA C2=0.282
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAGCTCTGTACATGAAAGGCC
R:
TCAGCTCCCCTGATATCCAGC
Band lengths:
214-718
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: